Browse Element(s) Details


OsAffx.3491.1.S1_at

Description tigr:9631.m04099
TID=OsAffx.3491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4259011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42550OsAffx.25494.1.S1_at10/113+23643788..23646025hypothetical protein
LOC_Os03g42569OsAffx.25495.1.S1_at10/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.3490.1.S1_at9/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.4759.1.S1_at3/113+23648652..23659081expressed protein
LOC_Os03g42590OsAffx.3491.1.S1_at11/113+23659482..23660168hypothetical protein
LOC_Os03g42600Os.15580.1.S1_at11/113+23669514..23670052expressed protein
LOC_Os03g42610Os.46012.2.S1_x_at8/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.27088.1.A1_x_at6/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.46012.3.S1_x_at4/113+23672364..23678027retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3491.1.S1_at--477--3491Chr03:23659966..23659990 (25 bp)
CAGGCAGCGGGCTTGAGCAGGAGGC
LOC_Os03g42590
OsAffx.3491.1.S1_at--504--4711Chr03:23659855..23659879 (25 bp)
GCTGGGAGCGGCATCCTTGGCCCCA
LOC_Os03g42590
OsAffx.3491.1.S1_at--622--571Chr03:23659843..23659867 (25 bp)
ATCCTTGGCCCCATGACAGCTGGAT
LOC_Os03g42590
OsAffx.3491.1.S1_at--1069--10851Chr03:23659839..23659863 (25 bp)
TTGGCCCCATGACAGCTGGATCCAC
LOC_Os03g42590
OsAffx.3491.1.S1_at--951--1051Chr03:23659783..23659807 (25 bp)
AGGTGGCCAGGAGCAATGCACACGC
LOC_Os03g42590
OsAffx.3491.1.S1_at--959--8451Chr03:23659780..23659804 (25 bp)
TGGCCAGGAGCAATGCACACGCACG
LOC_Os03g42590
OsAffx.3491.1.S1_at--19--9311Chr03:23659746..23659770 (25 bp)
TCCGCGCTGCCCCTCTGATGAGGAG
LOC_Os03g42590
OsAffx.3491.1.S1_at--202--5891Chr03:23659701..23659725 (25 bp)
GAGCGGCGCCACTGGTCTTGCGCAC
LOC_Os03g42590
OsAffx.3491.1.S1_at--1159--4691Chr03:23659535..23659559 (25 bp)
GCGGCTGGCCAGAACGGCATAGCCA
LOC_Os03g42590
OsAffx.3491.1.S1_at--1049--5451Chr03:23659524..23659548 (25 bp)
GAACGGCATAGCCAGCCCCTTGCGA
LOC_Os03g42590
OsAffx.3491.1.S1_at--144--9991Chr03:23659516..23659540 (25 bp)
TAGCCAGCCCCTTGCGAATGCGCGT
LOC_Os03g42590
Target Sequence 
CAGGCAGCGGGCTTGAGCAGGAGGCCGGCGGGGCTCTCTCCCGTCCTCCCCCGTGTGGATCCAGCGGCGGGCGGCACGGT
GGCCACCGCCGACAACGACAAGGAGGAAGTGGCTGGGAGCGGCATCCTTGGCCCCATGACAGCTGGATCCACGCCGCCCC
CACCGCCGCTGACGATGAGAAGGAGGTGGCCAGGAGCAATGCACACGCACGCCGGCCAGATCCGCGCTGCCCCTCTGATG
AGGAGGATGAGGAGGAGGCGGCCGAGAGCGGCGCCACTGGTCTTGCGCACACGCGGGCTGGCCGGATCCACGCCGGCCCC
ACCAACGACAACGACGAGGAGGCGGTGGCTAGGAGCGGTGCCGCCAGCCCCTCGTGCACGCGCGCTGGCTGGATCCACGC
CGCCCTCGCCGATGACGATGAGGAGGAGGCGGCGGCTGGCCAGAACGGCATAGCCAGCCCCTTGCGAATGCGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis