Browse Element(s) Details


OsAffx.25495.1.S1_at

Description tigr:9631.m04098
TID=OsAffx.25495.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4256910/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42540Os.45976.1.S1_x_at6/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42540Os.45976.1.S1_at3/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42550OsAffx.25494.1.S1_at10/113+23643788..23646025hypothetical protein
LOC_Os03g42569OsAffx.25495.1.S1_at10/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.3490.1.S1_at9/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.4759.1.S1_at3/113+23648652..23659081expressed protein
LOC_Os03g42590OsAffx.3491.1.S1_at11/113+23659482..23660168hypothetical protein
LOC_Os03g42600Os.15580.1.S1_at11/113+23669514..23670052expressed protein
LOC_Os03g42610Os.46012.2.S1_x_at8/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.27088.1.A1_x_at6/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.46012.3.S1_x_at4/113+23672364..23678027retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25495.1.S1_at--969--9951Chr03:23657157..23657181 (25 bp)
TACCTCATCAAACAAAACCAGCTGG
LOC_Os03g42569
OsAffx.25495.1.S1_at--166--2391NONE
AAACAAAACCAGCTGGTCGTCGCCT
NONE
OsAffx.25495.1.S1_at--343--3391Chr03:23658655..23658679 (25 bp)
CAGCGCAGGCGTGCATGAAGCAGCA
LOC_Os03g42569
OsAffx.25495.1.S1_at--151--3251Chr03:23658709..23658733 (25 bp)
CAAGCCTGGAGATCAGCCTCGGGAG
LOC_Os03g42569
OsAffx.25495.1.S1_at--871--3931Chr03:23658829..23658853 (25 bp)
CGGCGTCCAAAGAACTAACGCTACT
LOC_Os03g42569
OsAffx.25495.1.S1_at--591--5471Chr03:23658840..23658864 (25 bp)
GAACTAACGCTACTAAAGTGCTTGT
LOC_Os03g42569
OsAffx.25495.1.S1_at--76--2251Chr03:23658984..23659008 (25 bp)
AAATTAATGGCCGATCCCCAAGCCT
LOC_Os03g42569
OsAffx.25495.1.S1_at--36--2671Chr03:23659003..23659027 (25 bp)
AAGCCTGCTGCTGGCTAGCTTAATT
LOC_Os03g42569
OsAffx.25495.1.S1_at--633--4713Chr03:23659012..23659036 (25 bp)
GCTGGCTAGCTTAATTTCAACAAAT
LOC_Os03g42569
OsAffx.25495.1.S1_at--767--10111Chr03:23659036..23659060 (25 bp)
TATGAGGGCGGATGCTAGCTAGATT
LOC_Os03g42569
OsAffx.25495.1.S1_at--1059--6331Chr03:23659046..23659070 (25 bp)
GATGCTAGCTAGATTAATTCTTGGC
LOC_Os03g42569
Target Sequence 
TACCTCATCAAACAAAACCAGCTGGTCGTCGCCTCCTGCAGCTTCAGGCTGCTGGACGCCGACGACGACGACGTGGTCGC
CGCCGCCGCCGCTGACACCGCAGACCACGTCGACGACGACGACGATGAGGGGCAGCAGCGTCGTCGTCGCCGCAGCAGCG
CAGGCGTGCATGAAGCAGCAGCAGCAGCAGCAGACGCCATCGAGGGTGCCAAGCCTGGAGATCAGCCTCGGGAGGCAGGG
GTGGCAAAGCGGCAGCAGCTTGGAGCAGCAGCAGCAGCATCAGCAGCGTCATCATCAGCAGCAGCAGCGGCAGCGCAGCG
TGGAGTCCTCGGCGTCCAAAGAACTAACGCTACTAAAGTGCTTGTGAGATAATTAATTAAGTAAATTGAGTTTATAGTAG
AGTATGTTTAGCAAGTAGTAGTAGTTTAAGTAGTGGTTAATTAGTTATTAATCTCAACAAGCAGAATTAATCGAAGTGTA
ACAAAAATTAATGGCCGATCCCCAAGCCTGCTGCTGGCTAGCTTAATTTCAACAAATATGAGGGCGGATGCTAGCTAGAT
TAATTCTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis