Browse Element(s) Details


OsAffx.3490.1.S1_at

Description tigr:9631.m04097
TID=OsAffx.3490.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transfactor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g425699/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42540Os.45976.1.S1_x_at6/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42540Os.45976.1.S1_at3/113+23625903..23629075transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42550OsAffx.25494.1.S1_at10/113+23643788..23646025hypothetical protein
LOC_Os03g42569OsAffx.25495.1.S1_at10/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.3490.1.S1_at9/113+23648652..23659081expressed protein
LOC_Os03g42569OsAffx.4759.1.S1_at3/113+23648652..23659081expressed protein
LOC_Os03g42590OsAffx.3491.1.S1_at11/113+23659482..23660168hypothetical protein
LOC_Os03g42600Os.15580.1.S1_at11/113+23669514..23670052expressed protein
LOC_Os03g42610Os.46012.2.S1_x_at8/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.27088.1.A1_x_at6/113+23672364..23678027retrotransposon protein, putative, unclassified
LOC_Os03g42610Os.46012.3.S1_x_at4/113+23672364..23678027retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3490.1.S1_at--656--4371Chr03:23648901..23648925 (25 bp)
CCAAAGCTGTGCCTAGGGTTTGGCA
LOC_Os03g42569
OsAffx.3490.1.S1_at--146--1711Chr03:23648995..23649019 (25 bp)
ACCAACCTAGCCAGATCCAGAGATT
LOC_Os03g42569
OsAffx.3490.1.S1_at--446--6351Chr03:23649143..23649167 (25 bp)
GATGCGATGGACGACGGCTCTCCAT
LOC_Os03g42569
OsAffx.3490.1.S1_at--975--591Chr03:23649166..23649190 (25 bp)
ATGCGCACTTTGTGCAAGCCGTCGA
LOC_Os03g42569
OsAffx.3490.1.S1_at--841--5151Chr03:23649179..23649203 (25 bp)
GCAAGCCGTCGAGCTTCTTGGAGGC
LOC_Os03g42569
OsAffx.3490.1.S1_at--954--6211NONE
GAGGCCATGAAAGAGCGACACCAAA
NONE
OsAffx.3490.1.S1_at--25--8971Chr03:23649819..23649843 (25 bp)
TGAAAGATCTCACGCTGGCTCATGT
LOC_Os03g42569
OsAffx.3490.1.S1_at--719--6091Chr03:23649847..23650115 (25 bp)
GAGTCACCTGCAGGCAACTTATTTG
LOC_Os03g42569
OsAffx.3490.1.S1_at--341--2531NONE
AACTTATTTGCTTGACCTGGTGCAG
NONE
OsAffx.3490.1.S1_at--906--6231Chr03:23650558..23650582 (25 bp)
GATGGCTTTGACGTGCTTGGTAACA
LOC_Os03g42569
OsAffx.3490.1.S1_at--1007--7311Chr03:23650570..23650594 (25 bp)
GTGCTTGGTAACACCTCTTCAATTG
LOC_Os03g42569
Target Sequence 
CCAAAGCTGTGCCTAGGGTTTGGCACGGCGGCGGCGGCGGCGGCGGAGCAGTACAACAATGGCGGCTGCAACCTCCAGCA
GCAGCAGCGGCTGCACCAACCTAGCCAGATCCAGAGATTCAAGAAGAGCGCCAGCGGCGGCAGCCCTGTGTGCTCCGGCG
GCGCCACCGGCACCGGCGGCGTTGCGGCGGCGAGATCCGGGAATGGCGGTGGAGGTGGGAAGAGGAGCTCTAGGGCGCCG
AGGATGCGATGGACGACGGCTCTCCATGCGCACTTTGTGCAAGCCGTCGAGCTTCTTGGAGGCCATGAAAGAGCGACACC
AAAGTCAGTATTGGAGTTGATGAACGTGAAAGATCTCACGCTGGCTCATGTGAAGAGTCACCTGCAGGCAACTTATTTGC
TTGACCTGGTGCAGATGTATAGAACAGTGAAGGGAACCACAGACAGAACATGTGCTGAAGGCCATGGGCAGATGAGAGAT
ATGGGCTTTCTGAGGAGAGGAGGTGGTGGAGTGGATGGCTTTGACGTGCTTGGTAACACCTCTTCAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis