Browse Element(s) Details


OsAffx.3493.1.S1_at

Description tigr:9631.m04113
TID=OsAffx.3493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4272011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g42660NANA3+23719356..23722419retrotransposon protein, putative, unclassified
LOC_Os03g42670OsAffx.31222.1.S1_at9/113+23723193..23725536transposon protein, putative, unclassified
LOC_Os03g42690OsAffx.92.1.S1_at9/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42690Os.47407.1.A1_at1/113+23728384..23732478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g42700OsAffx.25497.1.S1_at11/113+23734469..23734778hypothetical protein
LOC_Os03g42710OsAffx.25498.1.S1_at11/113+23735539..23737020transducin family protein, putative
LOC_Os03g42720OsAffx.3493.1.S1_at11/113+23739610..23742050hypothetical protein
LOC_Os03g42730Os.46523.3.S1_x_at5/113+23743671..23745689hypothetical protein
LOC_Os03g42730Os.46523.1.S1_at4/113+23743671..23745689hypothetical protein
LOC_Os03g42740OsAffx.25499.1.S1_at11/113+23748704..23749653F-box family protein, putative
LOC_Os03g42750Os.17292.2.A1_s_at11/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42750Os.17292.1.S1_x_at10/113+23751455..23762616roothairless 1, putative, expressed
LOC_Os03g42760Os.52288.1.S1_at11/113+23766859..23770876IBR domain containing protein, expressed
LOC_Os03g42760Os.26818.2.S1_at1/113+23766859..23770876IBR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3493.1.S1_at--655--8351Chr03:23739650..23739674 (25 bp)
GGCGGCGCGTGGAGAGGTCATCAGC
LOC_Os03g42720
OsAffx.3493.1.S1_at--1092--6011Chr03:23739661..23739685 (25 bp)
GAGAGGTCATCAGCGACGGTGGCGG
LOC_Os03g42720
OsAffx.3493.1.S1_at--887--7691Chr03:23741744..23741768 (25 bp)
GGGTCTCACCAGATCTGGACGGCCG
LOC_Os03g42720
OsAffx.3493.1.S1_at--482--9671Chr03:23741749..23741773 (25 bp)
TCACCAGATCTGGACGGCCGCGGTG
LOC_Os03g42720
OsAffx.3493.1.S1_at--789--1091Chr03:23741776..23741800 (25 bp)
AGTGGCGGATGTCGTTGGAGATGCT
LOC_Os03g42720
OsAffx.3493.1.S1_at--295--1091Chr03:23741856..23741880 (25 bp)
AGGGCGGCGCTAGACCAGCGTGGTA
LOC_Os03g42720
OsAffx.3493.1.S1_at--1102--1691Chr03:23741869..23741893 (25 bp)
ACCAGCGTGGTAGCGAGGTCGGGAT
LOC_Os03g42720
OsAffx.3493.1.S1_at--940--7531Chr03:23741918..23741942 (25 bp)
GTGGCGATCAGAGCTTCTGCCGCCG
LOC_Os03g42720
OsAffx.3493.1.S1_at--785--9651Chr03:23741961..23741985 (25 bp)
TCAGACGAGACAACGCCCGGTCGCG
LOC_Os03g42720
OsAffx.3493.1.S1_at--376--4251Chr03:23741977..23742001 (25 bp)
CCGGTCGCGTGCTCCAAGAAGAAAT
LOC_Os03g42720
OsAffx.3493.1.S1_at--778--7791Chr03:23741979..23742003 (25 bp)
GGTCGCGTGCTCCAAGAAGAAATGA
LOC_Os03g42720
Target Sequence 
GGCGGCGCGTGGAGAGGTCATCAGCGACGGTGGCGGCAGTAGGAGCTGCGGAGGTTGCGCACGGAGAAGGGATCGGCGGC
GATGGCACGCGGAGGCTGCGGCGGCTGCACGCGGGGATGAGCAAGAAGTGGAGCAGCGGGGGTCTCACCAGATCTGGACG
GCCGCGGTGGCAGTGGCGGATGTCGTTGGAGATGCTGCGGGCGAGGTCAGGGAGGGTGGCAGCAGCGGGGATATCACGCA
CGACGTCGGGGAGGGCGGCGCTAGACCAGCGTGGTAGCGAGGTCGGGATGGGCAGTGGACAATGTCGGGGAGGGTGGCGA
TCAGAGCTTCTGCCGCCGGCCGTGAAGGCGGCGGCCTCAGACGAGACAACGCCCGGTCGCGTGCTCCAAGAAGAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis