Browse Element(s) Details


OsAffx.3592.1.S1_at

Description tigr:9631.m05184
TID=OsAffx.3592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5293011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52900OsAffx.26632.1.S1_x_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.1.S1_at10/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52900OsAffx.26632.2.S1_x_at8/113+30285144..30289720hypothetical protein
LOC_Os03g52910Os.51226.1.S1_at11/113+30299751..30301508expressed protein
LOC_Os03g52914NANA3+30302524..30303213NA
LOC_Os03g52920OsAffx.13474.1.S1_at11/113+30306356..30306982expressed protein
LOC_Os03g52930OsAffx.3592.1.S1_at11/113+30309423..30310458hypothetical protein
LOC_Os03g52930Os.46808.2.S1_x_at1/113+30309423..30310458hypothetical protein
LOC_Os03g52940NANA3+30319513..30320025hypothetical protein
LOC_Os03g52950OsAffx.20261.1.S1_at1/113+30322351..30325665retrotransposon protein, putative, unclassified
LOC_Os03g52960OsAffx.25694.1.S1_at11/113+30326173..30326811hypothetical protein
LOC_Os03g52970Os.33154.2.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.15137.1.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.33154.1.S1_s_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3592.1.S1_at--248--471Chr03:30310279..30310298 (20 bp)
ATCTCGAAGTCTCACATAGGCTCGG
LOC_Os03g52930
OsAffx.3592.1.S1_at--952--2831Chr03:30310280..30310304 (25 bp)
AAGTCTCACATAGGCTCGGATGGTC
LOC_Os03g52930
OsAffx.3592.1.S1_at--918--3311Chr03:30310286..30310310 (25 bp)
CACATAGGCTCGGATGGTCTCACAT
LOC_Os03g52930
OsAffx.3592.1.S1_at--991--911Chr03:30310291..30310315 (25 bp)
AGGCTCGGATGGTCTCACATCCTTC
LOC_Os03g52930
OsAffx.3592.1.S1_at--509--551Chr03:30310309..30310333 (25 bp)
ATCCTTCCACCAATTGAAATTCTTA
LOC_Os03g52930
OsAffx.3592.1.S1_at--862--3351Chr03:30310316..30310340 (25 bp)
CACCAATTGAAATTCTTAGCCCAAA
LOC_Os03g52930
OsAffx.3592.1.S1_at--570--10531Chr03:30310328..30310352 (25 bp)
TTCTTAGCCCAAATAATGCACCACC
LOC_Os03g52930
OsAffx.3592.1.S1_at--1135--4451Chr03:30310334..30310358 (25 bp)
GCCCAAATAATGCACCACCTAAAAT
LOC_Os03g52930
OsAffx.3592.1.S1_at--686--3291Chr03:30310349..30310373 (25 bp)
CACCTAAAATTGAATTGAACCCCAG
LOC_Os03g52930
OsAffx.3592.1.S1_at--115--5371Chr03:30310373..30310397 (25 bp)
GAACCAAAACAAAGGTCCCAATGAT
LOC_Os03g52930
OsAffx.3592.1.S1_at--824--8571Chr03:30310404..30310428 (25 bp)
TGGTAGGGAAGATGCAAGATCCATG
LOC_Os03g52930
Target Sequence 
ATCTCGAAGTCTCACATAGGCTCGGATGGTCTCACATCCTTCCACCAATTGAAATTCTTAGCCCAAATAATGCACCACCT
AAAATTGAATTGAACCCCAGAACCAAAACAAAGGTCCCAATGATTGGGAATGGTAGGGAAGATGCAAGATCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis