Browse Element(s) Details


OsAffx.3606.1.S1_s_at

Description tigr:9631.m05309
TID=OsAffx.3606.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5405011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54010OsAffx.3605.1.S1_at11/113+30915505..30916265hypothetical protein
LOC_Os03g54020Os.14491.2.S1_x_at3/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020Os.47463.1.S1_x_at2/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54020OsAffx.8135.1.S1_at1/113+30917937..30922550transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g54030NANA3+30923857..30928424transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g54040Os.20521.1.S1_at11/113+30931465..3093502750S ribosomal protein L6, putative, expressed
LOC_Os03g54050OsAffx.3606.1.S1_s_at11/113+30940306..30942347heavy metal-associated domain containing protein, expressed
LOC_Os03g54050Os.32126.1.S1_x_at11/113+30940306..30942347heavy metal-associated domain containing protein, expressed
LOC_Os03g54050Os.32126.2.S1_at11/113+30940306..30942347heavy metal-associated domain containing protein, expressed
LOC_Os03g54059NANA3+30945684..30947253expressed protein
LOC_Os03g54070NANA3+30949559..30949912hypothetical protein
LOC_Os03g54084OsAffx.25710.1.S1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.24622.1.A1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.3383.1.S1_a_at10/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54100Os.14641.1.S1_at7/113+30965240..30967857calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3606.1.S1_s_at--764--511Chr03:30941173..30941197 (25 bp)
ATCGAGTTCGACGTGAAGCACAACA
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--65--2731Chr03:30941188..30941212 (25 bp)
AAGCACAACAAGGTGATCGTGTCGG
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--414--5811Chr03:30941221..30941245 (25 bp)
GACCCGGACAAGCTCGCAGACAAGC
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--1155--8031Chr03:30941274..30941298 (25 bp)
GGAGATCGAGATCGTCGACCTCCCG
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--433--1811Chr03:30941340..30941364 (25 bp)
ACCCAAGAAAGAAGAGCCCCAGCCA
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--854--3371Chr03:30941359..30941383 (25 bp)
CAGCCACCGCCTCCTAAGGAGGAGG
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--150--4271Chr03:30941401..30941425 (25 bp)
CCGGCGGTGATTATCGTGGAGCCAC
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--995--7391Chr03:30941407..30941431 (25 bp)
GTGATTATCGTGGAGCCACCGGCGC
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--462--1671Chr03:30941447..30941471 (25 bp)
AGCCCGAGCCGCCGAAGAAAGAGCC
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--21--9211Chr03:30941608..30941632 (25 bp)
TGCCACTGCTGCTCCTGCGGGAAGG
LOC_Os03g54050
OsAffx.3606.1.S1_s_at--65--4191Chr03:30941706..30941730 (25 bp)
CCCTTGCGGCGGCTACAGGATCGTC
LOC_Os03g54050
Target Sequence 
ATCGAGTTCGACGTGAAGCACAACAAGGTGATCGTGTCGGGGCCCTTCGACCCGGACAAGCTCGCAGACAAGCTCTGCTG
CAAGGCGTGCAAGATCATCAAGGAGATCGAGATCGTCGACCTCCCGCCGCCGCCTCCGCCGCCGGCGCCGGAGCCGGAGC
CGGAGCCACCCAAGAAAGAAGAGCCCCAGCCACCGCCTCCTAAGGAGGAGGAGAAGCCCGAGCCGCCGCCGGCGGTGATT
ATCGTGGAGCCACCGGCGCCGGCGCCCGAGCCGGAGCCCGAGCCGCCGAAGAAAGAGCCGCCGCCGCCGCCGCCTCCCAA
GCAGGAGCCATGCCCGCCGCCGCCCAAGGTCGTCGAGGTCCCTTACCCCTGGCCCTACCCCTACCCGTTCCCGTCGTGGC
CGTCCGACTGCTGCTGCCACCATGGCCACGGCGGCTGCCACTGCTGCTCCTGCGGGAAGGCGCCGGAGCCGGCGCCGGCG
CCGGCGCCTCCGCCGCCGCAGTACATCCCCTGCTACCCGCCGCAGCAGCCCTACCCTTGCGGCGGCTACAGGATCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3606.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis