Browse Element(s) Details


OsAffx.3721.1.S1_at

Description tigr:9632.m00374
TID=OsAffx.3721.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0465010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04620OsAffx.10020.1.S1_x_at2/114+2203292..2203708retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g04640OsAffx.3720.1.S1_at8/114+2208008..2221395Histidine decarboxylase, putative
LOC_Os04g04640OsAffx.4841.1.S1_at1/114+2208008..2221395Histidine decarboxylase, putative
LOC_Os04g04650OsAffx.3721.1.S1_at10/114+2223703..2224588hypothetical protein
LOC_Os04g04660OsAffx.13666.1.S1_at10/114+2230570..2232034hypothetical protein
LOC_Os04g04670OsAffx.25863.1.S1_at1/114+2234045..2239385Protein kinase domain containing protein
LOC_Os04g04680OsAffx.13667.1.S1_at11/114+2240746..2241648hypothetical protein
LOC_Os04g04690OsAffx.13668.1.S1_x_at11/114+2243068..2243771Legume lectins beta domain containing protein
LOC_Os04g04700NANA4+2245801..2247497retrotransposon protein, putative, unclassified
LOC_Os04g04710NANA4+2247699..2250509retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3721.1.S1_at--1--391Chr02:18394290..18394423 (25 bp)
ATCACAGAGAGATTAGCCTTCTCGG
NONE
OsAffx.3721.1.S1_at--395--10591Chr04:2224428..2224452 (25 bp)
TTCTCGGCAAGATCAACCAGGTTTC
LOC_Os04g04650
OsAffx.3721.1.S1_at--466--1231Chr04:2224437..2224461 (25 bp)
AGATCAACCAGGTTTCAGCACGGTT
LOC_Os04g04650
OsAffx.3721.1.S1_at--594--1912Chr09:6822963..6822987 (25 bp)
ACGTGGTGTTGCGATTGCAGGGTTC
NONE
OsAffx.3721.1.S1_at--1076--10733Chr04:2224490..2224514 (25 bp)
TTGCAGGGTTCGGATCGTGCTGATT
LOC_Os04g04650
OsAffx.3721.1.S1_at--709--3951Chr04:2224500..2224524 (25 bp)
CGGATCGTGCTGATTGGAAGCCCAA
LOC_Os04g04650
OsAffx.3721.1.S1_at--168--8191Chr04:2224515..2224539 (25 bp)
GGAAGCCCAATCGTGTGTGTCAAGT
LOC_Os04g04650
OsAffx.3721.1.S1_at--929--45517Chr12:7222251..7222270 (20 bp)
GCCCAATCGTGTGTGTCAAGTTTCC
NONE
OsAffx.3721.1.S1_at--342--30511Chr09:1462308..1462331 (24 bp)
AATCGTGTGTGTCAAGTTTCCACTA
NONE
OsAffx.3721.1.S1_at--1015--7476Chr09:1462311..1462335 (25 bp)
GTGTGTGTCAAGTTTCCACTAAATC
NONE
OsAffx.3721.1.S1_at--246--7091Chr04:2224533..2224557 (25 bp)
GTCAAGTTTCCACTAAATCTAGAGT
LOC_Os04g04650
Target Sequence 
ATCACAGAGAGATTAGCCTTCTCGGCAAGATCAACCAGGTTTCAGCACGGTTGATAACCAAAGGAGACGTGGTGTTGCGA
TTGCAGGGTTCGGATCGTGCTGATTGGAAGCCCAATCGTGTGTGTCAAGTTTCCACTAAATCTAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis