Browse Element(s) Details


OsAffx.3761.1.S1_x_at

Description tigr:9632.m00885
TID=OsAffx.3761.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1013011/11hypothetical protein
LOC_Os04g072402/11hypothetical protein
LOC_Os04g136502/11hypothetical protein
LOC_Os10g173002/11hypothetical protein
LOC_Os02g110901/11hypothetical protein
LOC_Os06g139201/11hypothetical protein
LOC_Os12g013401/11hypothetical protein
LOC_Os03g365801/11hypothetical protein
LOC_Os04g226201/11hypothetical protein
LOC_Os05g223401/11retrotransposon protein, putative, unclassified
LOC_Os11g184501/11hypothetical protein
LOC_Os01g587201/11hypothetical protein
LOC_Os06g257701/11expressed protein
LOC_Os09g051001/11hypothetical protein
LOC_Os02g296801/11hypothetical protein
LOC_Os12g113101/11hypothetical protein
LOC_Os03g320001/11hypothetical protein
LOC_Os12g223301/11hypothetical protein
LOC_Os05g224501/11hypothetical protein
LOC_Os05g202801/11hypothetical protein
LOC_Os05g210001/11transposon protein, putative, unclassified
LOC_Os07g157601/11hypothetical protein
LOC_Os04g022401/11hypothetical protein
LOC_Os09g061601/11hypothetical protein
LOC_Os04g217601/11hypothetical protein
LOC_Os07g244691/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g181001/11hypothetical protein
LOC_Os09g070801/11hypothetical protein
LOC_Os08g179401/11hypothetical protein
LOC_Os02g260501/11hypothetical protein
LOC_Os07g245491/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g183401/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10080OsAffx.1196.1.S1_at2/114+5424186..5425436hypothetical protein
LOC_Os04g10080OsAffx.1196.1.S1_x_at1/114+5424186..5425436hypothetical protein
LOC_Os04g10090NANA4+5426303..5426749hypothetical protein
LOC_Os04g10100NANA4+5430295..5437020retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g10110NANA4+5440620..5441805retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_at4/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.1651.1.S1_x_at3/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120Os.51491.1.S1_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10120OsAffx.8201.1.S1_x_at1/114+5443873..5446115retrotransposon protein, putative, unclassified
LOC_Os04g10130OsAffx.3761.1.S1_x_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10130OsAffx.3761.1.S1_at11/114+5447866..5450737hypothetical protein
LOC_Os04g10140OsAffx.3762.1.S1_at11/114+5459004..5459727hypothetical protein
LOC_Os04g10140Os.37711.3.S1_x_at1/114+5459004..5459727hypothetical protein
LOC_Os04g10150Os.57362.1.S1_at10/114+5463453..5464267expressed protein
LOC_Os04g10160Os.16305.1.S1_at11/114+5464874..5466769Cytochrome P450 CYP99A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3761.1.S1_x_at--928--5311Chr04:5448853..5448877 (25 bp)
GAAGACCAAGGCCAAAAAGCAATTG
LOC_Os04g10130
OsAffx.3761.1.S1_x_at--410--2739Chr10:8372803..8372991 (25 bp)
AAGCAATTGATCCATCGGCTCTGGC
LOC_Os10g17300
OsAffx.3761.1.S1_x_at--105--3851Chr04:5448710..5448729 (20 bp)
CTGACAAAGCTGCAGCCGAATTGCA
LOC_Os04g10130
OsAffx.3761.1.S1_x_at--606--23911Chr10:8373316..8373339 (24 bp)
AACACTTAAACCAGCTCCACCAGTT
LOC_Os10g17300
OsAffx.3761.1.S1_x_at--553--6291Chr04:5448147..5448171 (25 bp)
GATGATACCACCAACAAAGCTCTAG
LOC_Os04g10130
OsAffx.3761.1.S1_x_at--1112--1391Chr04:5448040..5448064 (25 bp)
AGACTATGGGTCGATCAGAACTCGG
LOC_Os04g10130
OsAffx.3761.1.S1_x_at--180--4771Chr04:5448000..5448024 (25 bp)
GCTCTTATCCCAGATGAACTAGTCA
LOC_Os04g10130
OsAffx.3761.1.S1_x_at--829--6311Chr04:5447988..5448012 (25 bp)
GATGAACTAGTCAATGCCCCTACTC
LOC_Os04g10130
OsAffx.3761.1.S1_x_at--993--9271Chr04:5447965..5447989 (25 bp)
TCCGGCCGTTTACCTCGAGCAATAT
LOC_Os04g10130
OsAffx.3761.1.S1_x_at--286--92118Chr12:12606357..12606376 (20 bp)
TGCCAAGCTAAGACTAGCCGAGCAT
LOC_Os12g22330
OsAffx.3761.1.S1_x_at--704--4071Chr04:5447905..5447929 (25 bp)
CGAGCATCGGGAGCGCAAGAACATT
LOC_Os04g10130
Target Sequence 
GAAGACCAAGGCCAAAAAGCAATTGATCCATCGGCTCTGGCTCTTAAGAAGAAGGCCAAAAAGCATAAACCCAAGCCAGC
CGATGATCTGCCTACCCTAGATCCATCTATCGAGCAAGCTTTGGATGAAGAGGAAATTGAAGAGGATGCTGACAAAGCTG
CAGCCGAATTGCAGAAGAAGATCGCTGTGAAGAAGAAATCGGCAGCAACAACACTTAAACCAGCTCCACCAGTTTTAGTC
GATCTGTTCTCCTTTGATATCAAAGATTATTTTGATGAAGAGACAGAAGATGATACCACCAACAAAGCTCTAGCTCCCTT
GACCGATGATGTGAAGAAAATACTTGAAGACATTTCTCGTCGGCTAGAGGCATCATCACTAGATAGCTTGGTAGTAGACT
ATGGGTCGATCAGAACTCGGCTACATAAAGTTCAAGCTCTTATCCCAGATGAACTAGTCAATGCCCCTACTCCGGCCGTT
TACCTCGAGCAATATCAATTCAAGCTGGAGAATGCCAAGCTAAGACTAGCCGAGCATCGGGAGCGCAAGAACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3761.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis