Browse Element(s) Details


OsAffx.3764.1.S1_at

Description tigr:9632.m00923
TID=OsAffx.3764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1050011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g10450OsAffx.13751.1.S1_at10/114+5663294..5664870hypothetical protein
LOC_Os04g10450OsAffx.28563.1.S1_x_at1/114+5663294..5664870hypothetical protein
LOC_Os04g10460OsAffx.25959.2.S1_at11/114+5666494..5669400Amidase family protein, expressed
LOC_Os04g10470NANA4+5670693..5671064hypothetical protein
LOC_Os04g10480OsAffx.13753.1.S1_at11/114+5680124..5680792hypothetical protein
LOC_Os04g10490OsAffx.13754.1.S1_at11/114+5684894..5685166hypothetical protein
LOC_Os04g10500OsAffx.3764.1.S1_at11/114+5686035..5687404hypothetical protein
LOC_Os04g10514NANA4+5707627..5707824NA
LOC_Os04g10530Os.5271.1.S1_at11/114+5708108..5711954Amidase family protein, expressed
LOC_Os04g10539NANA4+5712316..5712565NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3764.1.S1_at--557--6591Chr04:5687338..5687362 (25 bp)
GATTGCACCGCCAATGTTGACACGT
LOC_Os04g10500
OsAffx.3764.1.S1_at--230--6651Chr04:5687323..5687347 (25 bp)
GTTGACACGTGCATAAGTAATACAT
LOC_Os04g10500
OsAffx.3764.1.S1_at--568--7071Chr04:5687307..5687331 (25 bp)
GTAATACATGCTCCTACATCCGAAA
LOC_Os04g10500
OsAffx.3764.1.S1_at--641--8813Chr06:27761627..27761649 (22 bp)
TGTTGTTGCTGTTGCACTACCAGCA
NONE
OsAffx.3764.1.S1_at--991--5092Chr04:5690712..5690736 (25 bp)
GCACTACCAGCAAATAAGGCGGAAA
NONE
OsAffx.3764.1.S1_at--901--2512Chr04:5690689..5690713 (25 bp)
AACTTTGGAGGCCACGTCCAAGCAG
NONE
OsAffx.3764.1.S1_at--1116--2712Chr04:5690670..5690694 (25 bp)
AAGCAGGCTACGGTTGCTGCCTCTA
NONE
OsAffx.3764.1.S1_at--92--4472Chr04:5690652..5690676 (25 bp)
GCCTCTACTCTCAACATGGCCAAGG
NONE
OsAffx.3764.1.S1_at--342--2332Chr04:5687155..5687179 (25 bp)
AAAGTTGCCGCGGTTTCCATCGTCT
LOC_Os04g10500
OsAffx.3764.1.S1_at--263--3552Chr04:5690593..5690617 (25 bp)
CATCGTCTACATGATTGCTGCTGAT
NONE
OsAffx.3764.1.S1_at--676--4531Chr04:5687100..5687120 (21 bp)
GCCCGCTGACAAGCTTAGGGTGTTA
LOC_Os04g10500
Target Sequence 
GATTGCACCGCCAATGTTGACACGTGCATAAGTAATACATGCTCCTACATCCGAAAGGCCCTCGATGGTGTTGTTGCTGT
TGCACTACCAGCAAATAAGGCGGAAACTTTGGAGGCCACGTCCAAGCAGGCTACGGTTGCTGCCTCTACTCTCAACATGG
CCAAGGCTACAGGAGAAAAGAAAAAAGTTGCCGCGGTTTCCATCGTCTACATGATTGCTGCTGATGCGGTTGACGCAGCC
GCGCCCGCTGACAAGCTTAGGGTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis