Browse Element(s) Details


OsAffx.3789.1.S1_at

Description tigr:9632.m01309
TID=OsAffx.3789.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1432011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14280Os.10827.1.S1_x_at8/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14280Os.46055.2.S1_x_at5/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14290OsAffx.13815.1.S1_at9/114+7986306..7987295hypothetical protein
LOC_Os04g14304Os.50770.1.S1_at11/114+7988860..7998379Calcium binding EGF domain containing protein, expressed
LOC_Os04g14304OsAffx.12953.1.S1_at1/114+7988860..7998379Calcium binding EGF domain containing protein, expressed
LOC_Os04g14320OsAffx.3789.1.S1_at11/114+8004098..8005149hypothetical protein
LOC_Os04g14330Os.2987.3.S1_x_at3/114+8007020..8008002retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g14340Os.55004.1.S1_at2/114+8013146..8017807retrotransposon protein, putative, unclassified, expressed
LOC_Os04g14350OsAffx.26032.1.S1_at11/114+8018364..8019129hypothetical protein
LOC_Os04g14360OsAffx.3790.1.S1_at11/114+8020498..8022115hypothetical protein
LOC_Os04g14370OsAffx.18604.2.S1_at11/114+8022985..8026614hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3789.1.S1_at--1010--10711Chr04:8005095..8005119 (25 bp)
TTGCTGTATGCCAGAATCCAAGAGG
LOC_Os04g14320
OsAffx.3789.1.S1_at--425--10131Chr04:8005089..8005113 (25 bp)
TATGCCAGAATCCAAGAGGTGCGAG
LOC_Os04g14320
OsAffx.3789.1.S1_at--19--7651Chr04:8004546..8004567 (22 bp)
GGGAGTTGAACCTCTATGGCTGCCT
LOC_Os04g14320
OsAffx.3789.1.S1_at--130--1251Chr04:8004543..8004567 (25 bp)
AGTTGAACCTCTATGGCTGCCTGCT
LOC_Os04g14320
OsAffx.3789.1.S1_at--229--9551Chr04:8004534..8004558 (25 bp)
TCTATGGCTGCCTGCTCAGATATGA
LOC_Os04g14320
OsAffx.3789.1.S1_at--570--8331Chr04:8004529..8004553 (25 bp)
GGCTGCCTGCTCAGATATGAGTATA
LOC_Os04g14320
OsAffx.3789.1.S1_at--294--6511Chr04:8004516..8004540 (25 bp)
GATATGAGTATATGCTAGAGCTTCT
LOC_Os04g14320
OsAffx.3789.1.S1_at--691--251Chr04:8004509..8004531 (23 bp)
ATATGCTAGAGCTTCTGTATGAGAA
LOC_Os04g14320
OsAffx.3789.1.S1_at--468--7511Chr04:8004162..8004186 (25 bp)
GTGGATTCATTGAGAATACAGCAAC
LOC_Os04g14320
OsAffx.3789.1.S1_at--813--5951Chr04:8004151..8004175 (25 bp)
GAGAATACAGCAACTAACAAACAAA
LOC_Os04g14320
OsAffx.3789.1.S1_at--225--2811Chr04:8004128..8004152 (25 bp)
AAGATTAACCTGCAAGAGCTGTGGT
LOC_Os04g14320
Target Sequence 
TTGCTGTATGCCAGAATCCAAGAGGTGCGAGGGGAGTTGAACCTCTATGGCTGCCTGCTCAGATATGAGTATATGCTAGA
GCTTCTGTATGAGAAATGTGGATTCATTGAGAATACAGCAACTAACAAACAAAGATTAACCTGCAAGAGCTGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis