Browse Element(s) Details


OsAffx.3848.1.S1_at

Description tigr:9632.m01990
TID=OsAffx.3848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2164010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21590Os.29775.1.S1_at10/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21590OsAffx.13908.1.S1_x_at1/114+12187160..12188617PB1 domain containing protein, expressed
LOC_Os04g21600Os.52131.1.S1_at11/114+12188922..12193009expressed protein
LOC_Os04g21610Os.19506.1.S1_at4/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.24469.1.S1_x_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21610OsAffx.9807.1.A1_at1/114+12196416..12204390hypothetical protein
LOC_Os04g21620NANA4+12208506..12208871hypothetical protein
LOC_Os04g21640OsAffx.3848.1.S1_at10/114+12213538..12216719hypothetical protein
LOC_Os04g21640Os.16349.1.S1_at2/114+12213538..12216719hypothetical protein
LOC_Os04g21650Os.10509.1.S1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.10509.2.S1_x_at11/114+12218212..12226554expressed protein
LOC_Os04g21650Os.23945.1.A1_at11/114+12218212..12226554expressed protein
LOC_Os04g21650OsAffx.26326.1.S1_at2/114+12218212..12226554expressed protein
LOC_Os04g21660Os.53212.1.S1_at10/114+12227812..1223397826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os04g21670OsAffx.25936.1.S1_s_at7/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21670OsAffx.25936.7.S1_s_at5/114+12235357..12235920transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g21680NANA4+12237661..12240933transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3848.1.S1_at--1004--471NONE
ATCGGCCTCCAACGAAATAATCGAT
NONE
OsAffx.3848.1.S1_at--730--3071Chr04:12214782..12214806 (25 bp)
AATAATCGATCCGTATCACGCCAGG
LOC_Os04g21640
OsAffx.3848.1.S1_at--827--371Chr04:12214796..12214820 (25 bp)
ATCACGCCAGGTTGGAAAGGAGCTT
LOC_Os04g21640
OsAffx.3848.1.S1_at--901--1531Chr04:12214816..12215241 (25 bp)
AGCTTGCCCCGGTTCATGGTGTCCA
LOC_Os04g21640
OsAffx.3848.1.S1_at--582--811Chr04:12215232..12215256 (25 bp)
ATGGTGTCCATCCATGGAGTCCGGA
LOC_Os04g21640
OsAffx.3848.1.S1_at--711--4331Chr04:12215239..12215263 (25 bp)
CCATCCATGGAGTCCGGAGGTTGCT
LOC_Os04g21640
OsAffx.3848.1.S1_at--159--8031Chr04:12215254..12215278 (25 bp)
GGAGGTTGCTGCTGGAGTCACCATC
LOC_Os04g21640
OsAffx.3848.1.S1_at--1078--7091Chr04:12215270..12215294 (25 bp)
GTCACCATCCTCTTAGGCAATGCAG
LOC_Os04g21640
OsAffx.3848.1.S1_at--279--5711Chr04:12215305..12215329 (25 bp)
GACTAGCCATGCCAAGTTGCTGTCA
LOC_Os04g21640
OsAffx.3848.1.S1_at--565--6671Chr04:12215320..12215344 (25 bp)
GTTGCTGTCAGTGATGCTCTCCCAA
LOC_Os04g21640
OsAffx.3848.1.S1_at--276--1911Chr04:12215356..12215376 (21 bp)
ACGTGTCGGCCAATGTCAGGTTCAA
LOC_Os04g21640
Target Sequence 
ATCGGCCTCCAACGAAATAATCGATCCGTATCACGCCAGGTTGGAAAGGAGCTTGCCCCGGTTCATGGTGTCCATCCATG
GAGTCCGGAGGTTGCTGCTGGAGTCACCATCCTCTTAGGCAATGCAGAAGACAAAATGACTAGCCATGCCAAGTTGCTGT
CAGTGATGCTCTCCCAAGCTCGCCATCGACGTGTCGGCCAATGTCAGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis