Browse Element(s) Details


OsAffx.3864.1.S1_x_at

Description tigr:9632.m02146
TID=OsAffx.3864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2314011/11expressed protein
LOC_Os03g072701/11expressed protein
LOC_Os01g572501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g23100OsAffx.13933.1.S1_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23100OsAffx.13933.1.S1_x_at11/114+13105363..13107194hypothetical protein
LOC_Os04g23109NANA4+13113156..13114003NA
LOC_Os04g23120OsAffx.13934.1.S1_at11/114+13115131..13116702hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_x_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23130OsAffx.31083.1.S1_at11/114+13117683..13118237hypothetical protein
LOC_Os04g23140Os.27641.1.A1_at11/114+13129401..13130778expressed protein
LOC_Os04g23140OsAffx.3864.1.S1_x_at11/114+13129401..13130778expressed protein
LOC_Os04g23150OsAffx.13935.1.S1_at10/114+13137807..13138793hypothetical protein
LOC_Os04g23170NANA4+13149471..13149941hypothetical protein
LOC_Os04g23180Os.12031.1.A1_at6/114+13152221..13159250cation efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3864.1.S1_x_at--629--9571Chr04:13129665..13129689 (25 bp)
TCTTCTCGTTAGTGAGGCGATGGAA
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--286--4091Chr04:13129707..13129731 (25 bp)
CGACGCGATTGTGACCAGCGACGGT
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--233--6771Chr04:13129744..13129768 (25 bp)
GTTACGGCTCGCAACTGCGATGGCG
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--891--10471Chr04:13129745..13129769 (25 bp)
TTACGGCTCGCAACTGCGATGGCGA
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--330--9931Chr04:13129746..13129770 (25 bp)
TACGGCTCGCAACTGCGATGGCGAC
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--941--1971Chr04:13129757..13129781 (25 bp)
ACTGCGATGGCGACGCGGATACGAC
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--452--3931Chr04:13129791..13129815 (25 bp)
CGGCGGCCGCGCAGATCCAGTCCGT
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--386--4151Chr04:13129798..13129822 (25 bp)
CGCGCAGATCCAGTCCGTGGCGGCA
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--828--7891Chr04:13129863..13129887 (25 bp)
GGTTGCGGCCCGATGTGACGGCGGC
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--818--6675Chr04:13130122..13130146 (25 bp)
GTTGCTTCCAGTTTCATGGTGCAGG
LOC_Os04g23140
OsAffx.3864.1.S1_x_at--334--1132Chr04:13130207..13130231 (25 bp)
AGTGCTCCATCGTTGAAGGTTGGCT
LOC_Os04g23140
Target Sequence 
TCTTCTCGTTAGTGAGGCGATGGAAGTTGGAGATGGCGGCGGCGACGCGATTGTGACCAGCGACGGTGGAGGCGACGAGG
TTACGGCTCGCAACTGCGATGGCGACGCGGATACGACCCGAGGCGACGGCGGCCGCGCAGATCCAGTCCGTGGCGGCAGC
GGCGGCGCGGATCAGTTCCGCGGCGGCGGCGACGACGTGGTTGCGGCCCGATGTGACGGCGGCGGTGCGGATCCAGTCCG
CGGTGGCAGCGGCGGCGCGGATCAGGTCCGCGGCGGCGGCGACGATGTGGTTGCGGCCCGACGTGACGGCGGCGGCGCGG
ACGCGGCCCGTGGCGACGGCGGCAGCACGGATCCAGTCCTCAGCGGCGGCTGCGGCGCGGACGCGGCCCGCGACGACGGT
GGCGGCGCGAGGGCCGTCTCCTGCGTCGTTGCTTCCAGTTGCAGCTCACCCTTTCTCGTTGCTTCCAGTTTCATGGTGCA
GGCCATCTCTTCCTCAACCATCTCCATCATCTCAGCAAGACAAGTTGATTTGCAGCCATTCAAGTGCTCCATCGTTGAAG
GTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3864.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis