Browse Element(s) Details


OsAffx.3910.1.S1_at

Description tigr:9632.m02525
TID=OsAffx.3910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=importin (nuclear transport factor ) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2685011/11Importin-beta N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26834Os.19426.1.S1_at11/114+15657201..15666302aspartyl protease family protein, putative, expressed
LOC_Os04g26850OsAffx.3910.1.S1_at11/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26850Os.17179.1.A1_at1/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26850Os.22487.1.S1_at1/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26860OsAffx.3911.1.S1_at11/114+15688826..15692255importin like protein, putative, expressed
LOC_Os04g26870Os.11469.1.S1_at11/114+15701417..15706514Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26880NANA4+15709146..15716294transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3910.1.S1_at--1036--1111Chr04:15684771..15684795 (25 bp)
AGTCCATTAGTAGCCTTCCTCATTT
LOC_Os04g26850
OsAffx.3910.1.S1_at--384--10371Chr04:15684794..15684818 (25 bp)
TTGTTTCCCCAAATAGAGCCGACTT
LOC_Os04g26850
OsAffx.3910.1.S1_at--1011--5851Chr04:15684809..15684833 (25 bp)
GAGCCGACTTTGTTGCCTATTTTAC
LOC_Os04g26850
OsAffx.3910.1.S1_at--841--10471Chr04:15685420..15685444 (25 bp)
TTACTCACCAACCATTTCACTGGAA
LOC_Os04g26850
OsAffx.3910.1.S1_at--134--6611Chr04:15685484..15685508 (25 bp)
GATTGGGCCATTGATTTCTTTGAGA
LOC_Os04g26850
OsAffx.3910.1.S1_at--870--10451Chr04:15686674..15686698 (25 bp)
TTAGACAACTACATTTCCCGTGGCA
LOC_Os04g26850
OsAffx.3910.1.S1_at--494--9311Chr04:15686689..15686713 (25 bp)
TCCCGTGGCACTGATCAATTTATTG
LOC_Os04g26850
OsAffx.3910.1.S1_at--28--2671Chr04:15686739..15686763 (25 bp)
AAGCCTATGGAGAGCACTGTCATCT
LOC_Os04g26850
OsAffx.3910.1.S1_at--998--1251Chr04:15686887..15686911 (25 bp)
AGATTCTGACATTATACCTGCTCCC
LOC_Os04g26850
OsAffx.3910.1.S1_at--733--311Chr04:15686900..15686924 (25 bp)
ATACCTGCTCCCAAGCTGATTGAAG
LOC_Os04g26850
OsAffx.3910.1.S1_at--329--9151Chr04:15686997..15687021 (25 bp)
TGCGTCGTGCAGTGAAGCCGTATCT
LOC_Os04g26850
Target Sequence 
AGTCCATTAGTAGCCTTCCTCATTTGTTTCCCCAAATAGAGCCGACTTTGTTGCCTATTTTACGAAGAATGTTGACTTCA
GATGGTCAAGATGTGTATGAAGAAGTTCTGGAGATAGTCTCCTATATGACATTTTACTCACCAACCATTTCACTGGAAAT
GTGGGGCTTGTGGCCTTTGATGATGGAGGCCCTTAATGATTGGGCCATTGATTTCTTTGAGAATATTCTGGTACCATTAG
ACAACTACATTTCCCGTGGCACTGATCAATTTATTGCATGCAAAGATCCTGATTATCAGCAAAGCCTATGGAGAGCACTG
TCATCTATTATGACAGACCAAAACATGGAAGATTCTGACATTATACCTGCTCCCAAGCTGATTGAAGTCGTTTTTCAAAA
TTGCAAAGGTCAAGTCGATCATTGGATTGAGCCGTATCTCAGGCTAACAATTGATTGGCTGCGTCGTGCAGTGAAGCCGT
ATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis