Browse Element(s) Details


OsAffx.3911.1.S1_at

Description tigr:9632.m02526
TID=OsAffx.3911.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=importin (nuclear transport factor ) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2686011/11importin like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26834Os.19426.1.S1_at11/114+15657201..15666302aspartyl protease family protein, putative, expressed
LOC_Os04g26850OsAffx.3910.1.S1_at11/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26850Os.17179.1.A1_at1/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26850Os.22487.1.S1_at1/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26860OsAffx.3911.1.S1_at11/114+15688826..15692255importin like protein, putative, expressed
LOC_Os04g26870Os.11469.1.S1_at11/114+15701417..15706514Auxin-induced protein PCNT115, putative, expressed
LOC_Os04g26880NANA4+15709146..15716294transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3911.1.S1_at--169--10791Chr04:15690552..15690576 (25 bp)
TTGTTGCTTGGGATTGACTTCACTA
LOC_Os04g26860
OsAffx.3911.1.S1_at--639--5691Chr04:15690567..15690591 (25 bp)
GACTTCACTAATTAGCCTTCCAGCT
LOC_Os04g26860
OsAffx.3911.1.S1_at--168--10691Chr04:15690584..15690608 (25 bp)
TTCCAGCTAATCACATTCCACCAGA
LOC_Os04g26860
OsAffx.3911.1.S1_at--893--2071Chr04:15690596..15690620 (25 bp)
ACATTCCACCAGAAGCTCTTGAGCG
LOC_Os04g26860
OsAffx.3911.1.S1_at--774--4811Chr04:15690610..15690634 (25 bp)
GCTCTTGAGCGCATTTTCAAAGCAA
LOC_Os04g26860
OsAffx.3911.1.S1_at--391--3331Chr04:15690635..15690659 (25 bp)
CACTAGAGCTTCTTGTTTCTTACAA
LOC_Os04g26860
OsAffx.3911.1.S1_at--512--7991Chr04:15690988..15691012 (25 bp)
GGATGAAGTATCTAGTGTCAATCTT
LOC_Os04g26860
OsAffx.3911.1.S1_at--873--6191Chr04:15691885..15691908 (24 bp)
GAGGCAAGAGGTTTCCAGCCGCACT
LOC_Os04g26860
OsAffx.3911.1.S1_at--173--3391Chr04:15691899..15691923 (25 bp)
CAGCCGCACTATGATGACGACGATG
LOC_Os04g26860
OsAffx.3911.1.S1_at--492--111Chr04:15691927..15691951 (25 bp)
ATTCTGATGATGACTTTAGCGATGA
LOC_Os04g26860
OsAffx.3911.1.S1_at--293--8871Chr04:15691949..15691973 (25 bp)
TGATGAGGAGTTGCAATCGCCAATT
LOC_Os04g26860
Target Sequence 
TTGTTGCTTGGGATTGACTTCACTAATTAGCCTTCCAGCTAATCACATTCCACCAGAAGCTCTTGAGCGCATTTTCAAAG
CAACACTAGAGCTTCTTGTTTCTTACAAGGATCAAGTTGCAGAATCTAAATGGGAAAATGAGGCTGCAGCTGAAGATTTG
GATGGATTTGATGGTGATGAAGAAGATGAGGATATTGAGTCTGATAAGGAGATGGGATATGATGATGAGGATGGGGATGA
AGTATCTAGTGTCAATCTTCAGAAACTAAGAGAGGCAAGAGGTTTCCAGCCGCACTATGATGACGACGATGATGATTCTG
ATGATGACTTTAGCGATGATGAGGAGTTGCAATCGCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis