Browse Element(s) Details


OsAffx.3928.1.S1_at

Description tigr:9632.m02660
TID=OsAffx.3928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2819011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g28150OsAffx.3926.1.S1_at11/114+16437494..16440185hypothetical protein
LOC_Os04g28160OsAffx.3927.1.S1_at11/114+16442525..16445691Response regulator receiver domain containing protein, expressed
LOC_Os04g28170OsAffx.26198.1.S1_at10/114+16452091..16455192expressed protein
LOC_Os04g28180Os.11541.1.S1_at11/114+16458323..1646099440S ribosomal protein S8, putative, expressed
LOC_Os04g28190OsAffx.3928.1.S1_at11/114+16464032..16465327hypothetical protein
LOC_Os04g28200Os.53129.1.S1_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200Os.53129.1.S1_x_at11/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28200OsAffx.26202.1.S1_x_at6/114+16474406..16477095Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g28210Os.49917.1.S1_at11/114+16479878..16483077Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3928.1.S1_at--495--8031Chr04:16464585..16464609 (25 bp)
GGAGTTACAATCACATCTCAACCAT
LOC_Os04g28190
OsAffx.3928.1.S1_at--93--1291Chr04:16464557..16464581 (25 bp)
AGATCTACCATCACGGTGGTTGCAA
LOC_Os04g28190
OsAffx.3928.1.S1_at--655--7911Chr04:16464540..16464564 (25 bp)
GGTTGCAACGCAAAAATTCTGGCTT
LOC_Os04g28190
OsAffx.3928.1.S1_at--1095--91Chr04:16464525..16464549 (25 bp)
ATTCTGGCTTGCTTATTGACACTAA
LOC_Os04g28190
OsAffx.3928.1.S1_at--905--8091Chr04:16464461..16464485 (25 bp)
GGACCTAGTGTCTATGAGCTTGTTC
LOC_Os04g28190
OsAffx.3928.1.S1_at--528--8911Chr04:16464447..16464471 (25 bp)
TGAGCTTGTTCATCATTGACCTCCC
LOC_Os04g28190
OsAffx.3928.1.S1_at--1049--7051Chr04:16464405..16464429 (25 bp)
GTAATCCAGAGATGCTCCAGCTTTC
LOC_Os04g28190
OsAffx.3928.1.S1_at--125--6351Chr04:16464395..16464419 (25 bp)
GATGCTCCAGCTTTCTCAAGAGGAA
LOC_Os04g28190
OsAffx.3928.1.S1_at--610--6291Chr04:16464151..16464175 (25 bp)
GATGATGTCTACTTGGTGCATATAA
LOC_Os04g28190
OsAffx.3928.1.S1_at--171--3211Chr04:16464098..16464122 (25 bp)
CAATGGCAAGGTCTTCCGTGTACAC
LOC_Os04g28190
OsAffx.3928.1.S1_at--233--8751Chr04:16464080..16464104 (25 bp)
TGTACACCCCTTCATGATGGCTTGG
LOC_Os04g28190
Target Sequence 
GGAGTTACAATCACATCTCAACCATGATAGATCTACCATCACGGTGGTTGCAACGCAAAAATTCTGGCTTGCTTATTGAC
ACTAAGTTCTATATGTTAGGTCCAAGTAAATACATTCTTGGATTGGACCTAGTGTCTATGAGCTTGTTCATCATTGACCT
CCCAAATGGATTGGAACACAGTAATCCAGAGATGCTCCAGCTTTCTCAAGAGGAAGATTCCAAGTTGTATATATTCCATT
TGAATGGTTTGAAGCTTCATATTTGGTTTCATGACATTAACAACACTGGCAACACTAGCAATTGGGTATTGATTGATACC
ATTAGTTTTCTGGAAGTGTTTGGTCATATTGCAAACCCTAGTTGGGATTCAGAGGTTGATATTAAAATTGCTAGAGGTGG
GAATAGTGGTGATTTTATATACTTGCATGTGGATGATGATGTCTACTTGGTGCATATAAAAAAGAGAATGGTGGAGAAGG
TGTTTGACAATGGCAAGGTCTTCCGTGTACACCCCTTCATGATGGCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis