Browse Element(s) Details


OsAffx.3966.1.S1_at

Description tigr:9632.m02994
TID=OsAffx.3966.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3147011/11hypothetical protein
LOC_Os05g388901/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31430OsAffx.26269.1.S1_at11/114+18613798..18614088hypothetical protein
LOC_Os04g31440NANA4+18618289..18619494Zinc knuckle family protein
LOC_Os04g31460Os.51625.1.S1_at10/114+18636414..18637062expressed protein
LOC_Os04g31470OsAffx.3966.1.S1_at11/114+18638500..18639072hypothetical protein
LOC_Os04g31484Os.51402.1.S1_at11/114+18639691..18641815expressed protein
LOC_Os04g31484Os.51402.1.S2_at11/114+18639691..18641815expressed protein
LOC_Os04g31500NANA4+18644984..18651143retrotransposon protein, putative, unclassified
LOC_Os04g31510NANA4+18652054..18654910retrotransposon protein, putative, unclassified
LOC_Os04g31520OsAffx.3967.1.S1_s_at11/114+18658911..18659588expressed protein
LOC_Os04g31520Os.4835.1.S1_at7/114+18658911..18659588expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3966.1.S1_at--594--9693Chr03:22125323..22125342 (20 bp)
TCACTTTTTCTCCTCTCTGGGCAAG
NONE
OsAffx.3966.1.S1_at--89--4351Chr04:18638889..18638913 (25 bp)
CCAGGGTCAGAGTCCAGGGCGAAGA
LOC_Os04g31470
OsAffx.3966.1.S1_at--353--9211Chr04:18638877..18638901 (25 bp)
TCCAGGGCGAAGACAAGCGCCGGCC
LOC_Os04g31470
OsAffx.3966.1.S1_at--869--1471Chr04:18638847..18638871 (25 bp)
AGAATCAGAGGTGCGCAGCGCGTCT
LOC_Os04g31470
OsAffx.3966.1.S1_at--1158--4573Chr05:22729118..22729137 (20 bp)
GCGCTCGGTGGCGAAGACGGGCTGA
LOC_Os05g38890
OsAffx.3966.1.S1_at--417--2731Chr04:18638746..18638770 (25 bp)
AAGCACAGTGGCAGCTCGGTGGAGA
LOC_Os04g31470
OsAffx.3966.1.S1_at--286--8451Chr04:18638667..18638691 (25 bp)
GGCCACTGCGCGGAGGTCGGAGTCT
LOC_Os04g31470
OsAffx.3966.1.S1_at--123--4071Chr04:18638599..18638623 (25 bp)
CGAGTCCGGCCATCGACAAGGGAGA
LOC_Os04g31470
OsAffx.3966.1.S1_at--152--2231Chr04:18638584..18638608 (25 bp)
ACAAGGGAGAAGCACGGCCCAAGCT
LOC_Os04g31470
OsAffx.3966.1.S1_at--188--3251Chr04:18638565..18638589 (25 bp)
CAAGCTGTGGGAGACAGAAGGCACA
LOC_Os04g31470
OsAffx.3966.1.S1_at--445--2151Chr04:18638552..18638576 (25 bp)
ACAGAAGGCACATAGCGTGGTCGGT
LOC_Os04g31470
Target Sequence 
TCACTTTTTCTCCTCTCTGGGCAAGCCGGCTGGTGGGTGGGGAGGAGGTTGCCGGGGCGAGGCGGGAGAGGAGGTCCAGC
GGCCGGCAGCGACGGAGCAAGCCGCTGCGCCAGGGTCAGAGTCCAGGGCGAAGACAAGCGCCGGCCGAAGGAGAATCAGA
GGTGCGCAGCGCGTCTGGCCGCCGATAGGAGAGAAGTGCGGCAACGGCGCTCGGTGGCGAAGACGGGCTGAGACCGGGGG
ACGGCAGGGGAGAAGCACAGTGGCAGCTCGGTGGAGAAGAAGGGATGAGGCCGGGGGAGACCGGAGGCACGCCGGCGCGG
CCGGTAGGGGAGGCCACTGCGCGGAGGTCGGAGTCTGGGGTGAAGACGGGCGGCAGCCGGGAGAACCGGAGGCGCGAGGC
GAGTCCGGCCATCGACAAGGGAGAAGCACGGCCCAAGCTGTGGGAGACAGAAGGCACATAGCGTGGTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis