Browse Element(s) Details


OsAffx.3967.1.S1_s_at

Description tigr:9632.m02999
TID=OsAffx.3967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3152011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31460Os.51625.1.S1_at10/114+18636414..18637062expressed protein
LOC_Os04g31470OsAffx.3966.1.S1_at11/114+18638500..18639072hypothetical protein
LOC_Os04g31484Os.51402.1.S1_at11/114+18639691..18641815expressed protein
LOC_Os04g31484Os.51402.1.S2_at11/114+18639691..18641815expressed protein
LOC_Os04g31500NANA4+18644984..18651143retrotransposon protein, putative, unclassified
LOC_Os04g31510NANA4+18652054..18654910retrotransposon protein, putative, unclassified
LOC_Os04g31520OsAffx.3967.1.S1_s_at11/114+18658911..18659588expressed protein
LOC_Os04g31520Os.4835.1.S1_at7/114+18658911..18659588expressed protein
LOC_Os04g31530OsAffx.14070.1.S1_at11/114+18672030..18673476hypothetical protein
LOC_Os04g31540OsAffx.14071.1.S1_at11/114+18674642..18675934F-box domain containing protein
LOC_Os04g31550Os.14285.2.S1_at11/114+18682233..18682955expressed protein
LOC_Os04g31550Os.54120.1.S1_at1/114+18682233..18682955expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3967.1.S1_s_at--570--2211Chr04:18658976..18659000 (25 bp)
ACAAGGCGTCGGTGGTTGCCGCTTT
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--195--7511Chr04:18658987..18659011 (25 bp)
GTGGTTGCCGCTTTTTCAGCGGCGT
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--333--691Chr04:18659095..18659119 (25 bp)
ATGAGGAGGCTGGACGACACGGTGG
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--696--3431Chr04:18659155..18659179 (25 bp)
CAGAGGCGCGTCTTGCAGGCGACCA
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--385--10731Chr04:18659167..18659191 (25 bp)
TTGCAGGCGACCAGCCACTACGTAG
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--1115--3711Chr04:18659184..18659208 (25 bp)
CTACGTAGCTCCGAGCGCGCTGAAT
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--671--4791Chr04:18659191..18659215 (25 bp)
GCTCCGAGCGCGCTGAATCCGGATC
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--175--3471Chr04:18659218..18659242 (25 bp)
CAGGGTTGCATCCAGTCCTGCCTTC
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--791--4191Chr04:18659269..18659293 (25 bp)
CCCGGATCGCACTGTAATCGTAAAT
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--606--2951Chr04:18659284..18659308 (25 bp)
AATCGTAAATACTACAACCAGGGCT
LOC_Os04g31520
OsAffx.3967.1.S1_s_at--163--2251Chr04:18659346..18659370 (25 bp)
AAATTGAATTCTATCCTTGTGCATG
LOC_Os04g31520
Target Sequence 
ACAAGGCGTCGGTGGTTGCCGCTTTTTCAGCGGCGTGGCTCCTCCTCCTTGTCCTCGTCGTCCTCCTGGCCGACGAGGCC
GCGGCGGCGCCGGCTGGCCGTGAGGCCGCGGCGGCGTGGATGAGGAGGCTGGACGACACGGTGGAGCCGGAGCCGCTGCC
GGCGGAGCTGGACAGGGTGCAGAGGCGCGTCTTGCAGGCGACCAGCCACTACGTAGCTCCGAGCGCGCTGAATCCGGATC
GCCAGGGTTGCATCCAGTCCTGCCTTCCGGGCAGTCAGTACAGTGTTCCACCGCCCGGATCGCACTGTAATCGTAAATAC
TACAACCAGGGCTGTTGACTACTGCAACTACTGGTGATTCTGATCACTGCAAATTGAATTCTATCCTTGTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3967.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis