Browse Element(s) Details


OsAffx.4060.1.S1_at

Description tigr:9632.m04075
TID=OsAffx.4060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4263411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42600Os.38233.1.S2_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S1_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S2_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42610Os.8398.1.S1_a_at11/114+24988714..24994819expressed protein
LOC_Os04g42620Os.15713.1.S1_a_at11/114+24998777..25000582Leucine Rich Repeat family protein, expressed
LOC_Os04g42634OsAffx.4060.1.S1_at11/114+25006094..25009700hypothetical protein
LOC_Os04g42634OsAffx.4061.1.S1_at10/114+25006094..25009700hypothetical protein
LOC_Os04g42634Os.25318.1.A1_at9/114+25006094..25009700hypothetical protein
LOC_Os04g42650Os.50505.2.S1_at11/114+25013340..25015569expressed protein
LOC_Os04g42670Os.49610.1.S1_at11/114+25025431..25027439F-box domain containing protein, expressed
LOC_Os04g42680OsAffx.14244.1.S1_at10/114+25030836..25032080hypothetical protein
LOC_Os04g42690Os.20755.1.S1_at11/114+25032328..25034055UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4060.1.S1_at--1062--3771Chr04:25006280..25006304 (25 bp)
TAACCGAGCTATTTGGGTAGAAACT
LOC_Os04g42634
OsAffx.4060.1.S1_at--432--7851Chr04:25006265..25006289 (25 bp)
GGTAGAAACTCCATCATGGGTCATT
LOC_Os04g42634
OsAffx.4060.1.S1_at--356--811Chr04:25006250..25006274 (25 bp)
ATGGGTCATTACATGCTGCGGTTGG
LOC_Os04g42634
OsAffx.4060.1.S1_at--380--10871Chr04:25006229..25006253 (25 bp)
TTGGCAGCTAAAGCCTGTGGTGCTA
LOC_Os04g42634
OsAffx.4060.1.S1_at--157--7491Chr04:25006213..25006237 (25 bp)
GTGGTGCTAATTAATGTTGACGCCT
LOC_Os04g42634
OsAffx.4060.1.S1_at--1019--3131Chr04:25006205..25006229 (25 bp)
AATTAATGTTGACGCCTACATCGAC
LOC_Os04g42634
OsAffx.4060.1.S1_at--964--4451Chr04:25006192..25006216 (25 bp)
GCCTACATCGACAAAGCGCATATCT
LOC_Os04g42634
OsAffx.4060.1.S1_at--990--1631Chr04:25006178..25006202 (25 bp)
AGCGCATATCTATATAACTCCAGAG
LOC_Os04g42634
OsAffx.4060.1.S1_at--496--2551Chr04:25006163..25006187 (25 bp)
AACTCCAGAGCACATGTCTTCATAC
LOC_Os04g42634
OsAffx.4060.1.S1_at--348--7151Chr04:25006148..25006172 (25 bp)
GTCTTCATACAGTTTGTCATTGCCA
LOC_Os04g42634
OsAffx.4060.1.S1_at--611--71Chr04:25006130..25006154 (25 bp)
ATTGCCATCAATCATCAAGTCCACC
LOC_Os04g42634
Target Sequence 
TAACCGAGCTATTTGGGTAGAAACTCCATCATGGGTCATTACATGCTGCGGTTGGCAGCTAAAGCCTGTGGTGCTAATTA
ATGTTGACGCCTACATCGACAAAGCGCATATCTATATAACTCCAGAGCACATGTCTTCATACAGTTTGTCATTGCCATCA
ATCATCAAGTCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis