Browse Element(s) Details


OsAffx.4066.1.S1_at

Description tigr:9632.m04109
TID=OsAffx.4066.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4294011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42880Os.49846.1.S1_at11/114+25155544..25157616WD repeat-containing protein C9orf112 homolog, putative, expressed
LOC_Os04g42889OsAffx.4065.1.S1_at11/114+25161173..25161781hypothetical protein
LOC_Os04g42900Os.53218.1.S1_at11/114+25162623..25165852expressed protein
LOC_Os04g42900OsAffx.24850.1.S1_s_at1/114+25162623..25165852expressed protein
LOC_Os04g42910OsAffx.14247.1.S1_at9/114+25166960..25169381hypothetical protein
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42960Os.50332.1.S1_at11/114+25197992..25199617Lung seven transmembrane receptor family protein, expressed
LOC_Os04g42970OsAffx.14248.1.S1_at11/114+25201206..25201820hypothetical protein
LOC_Os04g42980Os.52137.1.S1_at11/114+25204973..25210172zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4066.1.S1_at--802--3891Chr04:25181730..25181754 (25 bp)
CTGGTCGTCTGCAAGGTCTACCCGG
LOC_Os04g42940
OsAffx.4066.1.S1_at--258--9411Chr04:25181726..25181750 (25 bp)
TCGTCTGCAAGGTCTACCCGGCGCG
LOC_Os04g42940
OsAffx.4066.1.S1_at--482--1871Chr04:25181636..25181660 (25 bp)
ACGAGGACGCCAAGCCGCAGGTGCT
LOC_Os04g42940
OsAffx.4066.1.S1_at--929--3831Chr04:25181501..25181525 (25 bp)
CTGCTGCCAACGACCGGTGCGAGTG
LOC_Os04g42940
OsAffx.4066.1.S1_at--1098--2571Chr04:25181493..25181517 (25 bp)
AACGACCGGTGCGAGTGGTTCTTCG
LOC_Os04g42940
OsAffx.4066.1.S1_at--67--6991Chr04:25181389..25181413 (25 bp)
GTACGTGCCGGTGCGCGAGTGCCGC
LOC_Os04g42940
OsAffx.4066.1.S1_at--298--4531Chr04:25181333..25181357 (25 bp)
GCCGCCTCGTGTTCTGGTACAGGGA
LOC_Os04g42940
OsAffx.4066.1.S1_at--617--4291Chr04:25181329..25181353 (25 bp)
CCTCGTGTTCTGGTACAGGGAGGAC
LOC_Os04g42940
OsAffx.4066.1.S1_at--286--5771Chr04:25181259..25181283 (25 bp)
GACGAGTACAGGTTCGGCCCGGACT
LOC_Os04g42940
OsAffx.4066.1.S1_at--462--8131Chr04:25181239..25181263 (25 bp)
GGACTTCCCGTACGGCGAGCTGCCC
LOC_Os04g42940
OsAffx.4066.1.S1_at--1122--1831Chr04:25181192..25181216 (25 bp)
ACGAAGAGCTGGTGGTGTACAAGGT
LOC_Os04g42940
Target Sequence 
CTGGTCGTCTGCAAGGTCTACCCGGCGCGCGGCGGGGCGCTCCACGAGCGGCTCGGGGCCGACCGGGCGGTGCTCGCGAC
GCGCCACCGCGCCGACGAGGACGCCAAGCCGCAGGTGCTCGTCCAGCTCTACCTCGCCAGCCTCCGCCTCGGGAACCCGC
TCGCGTGCCGCGTGCACCGCGCCGACGACGTCTTCGACGCGCACCCGGCGGTGATCACGGCCGCGCTCCCTGCTGCCAAC
GACCGGTGCGAGTGGTTCTTCGCCGCCGTGCGCCCGCGCGGGCACGCGCAAGGGCACGGGGACGGCGCGCCGCCGCGCCC
GCGGAAGGCCGGGCCAGGGGCGTACGTGCCGGTGCGCGAGTGCCGCGTCGTGGACGGGAGGCGCGGGGACATGGGCTGCC
GCCTCGTGTTCTGGTACAGGGAGGACGACGAGGAGGCGAGGCGGGCGTCGCGGAGGACGGAGTGGTGGATGGACGAGTAC
AGGTTCGGCCCGGACTTCCCGTACGGCGAGCTGCCCGCGCCCATGGCGCGCGGCGAAGACGAAGAGCTGGTGGTGTACAA
GGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4066.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis