Browse Element(s) Details


OsAffx.4116.1.S1_x_at

Description tigr:9632.m04599
TID=OsAffx.4116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4761011/11hypothetical protein
LOC_Os07g225901/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47590Os.28054.1.S1_at11/114+28005406..28021730Niemann-Pick C type protein family protein, expressed
LOC_Os04g47600OsAffx.19542.3.S1_x_at3/114+28025944..28030166retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g47610OsAffx.4116.1.S1_x_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47610OsAffx.4116.1.S1_at11/114+28041996..28042370hypothetical protein
LOC_Os04g47620OsAffx.29815.1.S1_x_at11/114+28043844..28046652Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os04g47630OsAffx.26505.1.S1_at11/114+28048432..28048922hypothetical protein
LOC_Os04g47640OsAffx.26506.1.S1_at11/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47640Os.28979.1.S1_at1/114+28054429..28056732RWP-RK domain containing protein, expressed
LOC_Os04g47650OsAffx.26507.1.S1_x_at11/114+28059403..28059826expressed protein
LOC_Os04g47650OsAffx.11111.1.S1_x_at2/114+28059403..28059826expressed protein
LOC_Os04g47660NANA4+28061744..28063868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g47670Os.28549.1.S1_at11/114+28064986..28066112expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4116.1.S1_x_at--184--1071Chr04:28042033..28042057 (25 bp)
AGTGGATGGACTCCAAAACTACTGA
LOC_Os04g47610
OsAffx.4116.1.S1_x_at--362--6231Chr04:28042037..28042061 (25 bp)
GATGGACTCCAAAACTACTGAGACA
LOC_Os04g47610
OsAffx.4116.1.S1_x_at--1025--5711Chr04:28042041..28042065 (25 bp)
GACTCCAAAACTACTGAGACAGAAG
LOC_Os04g47610
OsAffx.4116.1.S1_x_at--433--9234Chr09:15469666..15469685 (20 bp)
TCCTTCCACAACTGCCAAGAAACTA
NONE
OsAffx.4116.1.S1_x_at--691--2552Chr04:28042107..28042131 (25 bp)
AACTGCCAAGAAACTAGCAGCACCA
LOC_Os04g47610
OsAffx.4116.1.S1_x_at--950--6091Chr04:28042134..28042158 (25 bp)
GAGTCGAAACCGTCGCGGAGATGCT
LOC_Os04g47610
OsAffx.4116.1.S1_x_at--419--2611Chr04:28042141..28042165 (25 bp)
AACCGTCGCGGAGATGCTCAGGTAA
LOC_Os04g47610
OsAffx.4116.1.S1_x_at--697--8252Chr04:28042222..28042246 (25 bp)
GGCAGCCCACCCAGGAGGCGAAAGC
LOC_Os04g47610
OsAffx.4116.1.S1_x_at--282--3351Chr04:28042229..28042253 (25 bp)
CACCCAGGAGGCGAAAGCACGCGGA
LOC_Os04g47610
OsAffx.4116.1.S1_x_at--977--4091Chr04:28042240..28042264 (25 bp)
CGAAAGCACGCGGAGCCAGACCTGT
LOC_Os04g47610
OsAffx.4116.1.S1_x_at--497--4693Chr10:8636145..8636168 (24 bp)
GCGGAGCCAGACCTGTCGAGCAAAC
NONE
Target Sequence 
AGTGGATGGACTCCAAAACTACTGAGACAGAAGAGAGCGCGGAGTCAAAAACCCTAGCGTTCCGCTCCTTCCACAACTGC
CAAGAAACTAGCAGCACCAGGGAGTCGAAACCGTCGCGGAGATGCTCAGGTAAGCAGGCCCTGGAGGACGACCACCAGTC
CTGGAACCAGCTACCGCGGGGGGAGAGAGGGCAGCCCACCCAGGAGGCGAAAGCACGCGGAGCCAGACCTGTCGAGCAAA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4116.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis