Browse Element(s) Details


OsAffx.4163.1.S1_at

Description tigr:9632.m05176
TID=OsAffx.4163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5335011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53300Os.55517.1.S1_x_at11/114+31530077..31532540Common central domain of tyrosinase family protein, expressed
LOC_Os04g53310Os.23163.1.S1_at11/114+31532517..31540357Soluble starch synthase 3, chloroplast precursor, putative, expressed
LOC_Os04g53320OsAffx.26591.1.S1_at11/114+31543868..31544446hypothetical protein
LOC_Os04g53330Os.23474.1.A1_at11/114+31545070..31547791RRM-containing protein, putative, expressed
LOC_Os04g53340NANA4+31547980..31548210hypothetical protein
LOC_Os04g53350OsAffx.4163.1.S1_at11/114+31549966..31554077expressed protein
LOC_Os04g53350Os.57431.1.S1_x_at7/114+31549966..31554077expressed protein
LOC_Os04g53360Os.50566.1.S1_at11/114+31558251..31561915expressed protein
LOC_Os04g53360OsAffx.19501.1.S1_x_at2/114+31558251..31561915expressed protein
LOC_Os04g53370NANA4+31567751..315688681-acyl-sn-glycerol-3-phosphate acyltransferase, putative, expressed
LOC_Os04g53380OsAffx.10806.1.S1_x_at11/114+31569399..31571427expressed protein
LOC_Os04g53380Os.17238.1.S1_at8/114+31569399..31571427expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4163.1.S1_at--959--6411Chr04:31550510..31550534 (25 bp)
GATCATCTAATGTTCGGCTATCCGT
LOC_Os04g53350
OsAffx.4163.1.S1_at--252--8112Chr04:31309752..31309771 (20 bp)
GGACCCATTCTACCATTGACAGTGG
NONE
OsAffx.4163.1.S1_at--552--2751Chr04:31550453..31550477 (25 bp)
AAGAAATAGGCCTCAGCTCGCCGAG
LOC_Os04g53350
OsAffx.4163.1.S1_at--71--8091Chr04:31550417..31550441 (25 bp)
GGAGCTCCCCGGATTCAATGAGCAT
LOC_Os04g53350
OsAffx.4163.1.S1_at--594--8331Chr04:31550370..31550394 (25 bp)
GGCTGCATGGAGTACCCACGGACAT
LOC_Os04g53350
OsAffx.4163.1.S1_at--909--8131Chr04:31550351..31550375 (25 bp)
GGACATCCCAGAAGCACAGCCTGAA
LOC_Os04g53350
OsAffx.4163.1.S1_at--776--5351Chr04:31550263..31550287 (25 bp)
GAAGATCTAGAGTTGCCACGACCAC
LOC_Os04g53350
OsAffx.4163.1.S1_at--996--6651Chr04:31550252..31550276 (25 bp)
GTTGCCACGACCACCGAATAGGGAA
LOC_Os04g53350
OsAffx.4163.1.S1_at--256--6891Chr04:31550184..31550208 (25 bp)
GTATTTCCATGCTTCATTTCTCTTG
LOC_Os04g53350
OsAffx.4163.1.S1_at--693--9111Chr04:31550080..31550104 (25 bp)
TGCTGCTTCTGTATCTCACTGTAGT
LOC_Os04g53350
OsAffx.4163.1.S1_at--1071--6491Chr04:31550033..31550057 (25 bp)
GATAGGCTACTGTGAGATCCATTAT
LOC_Os04g53350
Target Sequence 
GATCATCTAATGTTCGGCTATCCGTTGGGACCCATTCTACCATTGACAGTGGCATTCAAGAAATAGGCCTCAGCTCGCCG
AGCATAGGGCAATGGAGCTCCCCGGATTCAATGAGCATGCAATTCAACCGGGGCTTCAAGGGCTGCATGGAGTACCCACG
GACATCCCAGAAGCACAGCCTGAAATCCAAGCTCATGGAGGCACGGATGGAGAGCCAGAAGGTCCAGCTCCGGCAAGTGC
TCAAGCAGAAGATCTAGAGTTGCCACGACCACCGAATAGGGAAAACATTGTAAGCCTAGAATTTAATCCAAGGAATAATT
CCAAGAGTATTTCCATGCTTCATTTCTCTTGTTTTAGGGTAACTTGTAATGTATGCACTACAGTACTGAAGAAAAAGATC
AGGTTGGCCTTTGTGGGCCAGCTGGAGCATTGCTGCTTCTGTATCTCACTGTAGTCCTGGTGATATTGATTCCATTTGAT
AGGCTACTGTGAGATCCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis