Browse Element(s) Details


OsAffx.4166.1.S1_at

Description tigr:9632.m05181
TID=OsAffx.4166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5340011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53370NANA4+31567751..315688681-acyl-sn-glycerol-3-phosphate acyltransferase, putative, expressed
LOC_Os04g53380OsAffx.10806.1.S1_x_at11/114+31569399..31571427expressed protein
LOC_Os04g53380Os.17238.1.S1_at8/114+31569399..31571427expressed protein
LOC_Os04g53390OsAffx.4165.1.S1_at11/114+31582871..31584169BTB/POZ domain containing protein
LOC_Os04g53400OsAffx.4166.1.S1_at11/114+31590645..31591772BTB/POZ domain containing protein
LOC_Os04g53410Os.5294.1.S1_at11/114+31592598..31594336BTB/POZ domain containing protein, expressed
LOC_Os04g53420OsAffx.10931.3.S1_at2/114+31595909..31596364hypothetical protein
LOC_Os04g53430OsAffx.14396.1.S1_at11/114+31598562..31599683BTB/POZ domain containing protein, expressed
LOC_Os04g53440Os.27752.1.S1_at11/114+31600401..31604418RNA Binding Protein 45, putative, expressed
LOC_Os04g53450Os.53152.1.S1_at11/114+31605034..31609789expressed protein
LOC_Os04g53460Os.27353.1.S1_at11/114+31612182..31617391AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4166.1.S1_at--466--6511Chr04:31591431..31591455 (25 bp)
GATTCCTTGCCAGAAAACCCGGACA
LOC_Os04g53400
OsAffx.4166.1.S1_at--172--5631Chr04:31591452..31591476 (25 bp)
GACACACCTGGCGATGATCAAGATT
LOC_Os04g53400
OsAffx.4166.1.S1_at--96--5072Chr05:17833486..17833913 (25 bp)
GCAGCATTTGATGGTGGCAGCCGAT
NONE
OsAffx.4166.1.S1_at--1089--3371Chr04:31591504..31591528 (25 bp)
CAGCCGATCGGTATGGCCTGGACAG
LOC_Os04g53400
OsAffx.4166.1.S1_at--276--8531Chr04:31591522..31591546 (25 bp)
TGGACAGGCTCGTGCTGATCTGCGA
LOC_Os04g53400
OsAffx.4166.1.S1_at--258--8691Chr04:31591555..31591579 (25 bp)
TGTGCCGCGGCATTGACGTGCAGAC
LOC_Os04g53400
OsAffx.4166.1.S1_at--812--1511Chr04:31591606..31591630 (25 bp)
AGCAGCATCAGCGTGTAGCGCTCAA
LOC_Os04g53400
OsAffx.4166.1.S1_at--858--6331Chr04:31591632..31591656 (25 bp)
GATGCTTGCCTTGGTTTCATAGTCT
LOC_Os04g53400
OsAffx.4166.1.S1_at--636--10551Chr04:31591666..31591690 (25 bp)
TTCTTGGCGCTGTCGCTAGGACTGA
LOC_Os04g53400
OsAffx.4166.1.S1_at--903--7871Chr04:31591693..31591717 (25 bp)
GGTTTAAGCATCTGCTCACGACCTG
LOC_Os04g53400
OsAffx.4166.1.S1_at--690--5831Chr04:31591712..31591736 (25 bp)
GACCTGCCCGTCGATTATGGTGGAC
LOC_Os04g53400
Target Sequence 
GATTCCTTGCCAGAAAACCCGGACACACCTGGCGATGATCAAGATTGCATGGCGATGCAGCATTTGATGGTGGCAGCCGA
TCGGTATGGCCTGGACAGGCTCGTGCTGATCTGCGAGGAGAAGCTGTGCCGCGGCATTGACGTGCAGACGGTGGCGACGA
CGCTGGCTTTGGCAGAGCAGCATCAGCGTGTAGCGCTCAAGGATGCTTGCCTTGGTTTCATAGTCTCTCGGGGTGTTCTT
GGCGCTGTCGCTAGGACTGATGGGTTTAAGCATCTGCTCACGACCTGCCCGTCGATTATGGTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis