Browse Element(s) Details


OsAffx.425.1.S1_at

Description gb:NM_194615.1
DB_XREF= gi:37530589
TID=OsAffx.425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0023I19.13), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0279011/11transposon protein, putative, Mariner sub-class
LOC_Os04g261301/11transposon protein, putative, Mariner sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02770Os.10574.1.S1_at10/1110+1076943..1081099Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g02780OsAffx.18095.1.S1_x_at11/1110+1092946..1094113hypothetical protein
LOC_Os10g02790OsAffx.425.1.S1_at11/1110+1099004..1100764transposon protein, putative, Mariner sub-class
LOC_Os10g02800OsAffx.18096.1.S1_at11/1110+1101004..1101811hypothetical protein
LOC_Os10g02814Os.46737.3.S1_x_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02814Os.46737.1.S1_at11/1110+1110875..1115631G-protein alpha subunit, putative, expressed
LOC_Os10g02830OsAffx.30247.1.S1_x_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02830OsAffx.30247.1.S1_at11/1110+1120860..1121120hypothetical protein
LOC_Os10g02840Os.46511.2.S1_x_at11/1110+1124076..1125580O-methyltransferase family protein, expressed
LOC_Os10g02840Os.46511.1.S1_at10/1110+1124076..1125580O-methyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.425.1.S1_at--360--2132Chr10:1100247..1100271 (25 bp)
ACAGGATAATGCACCTTCCCATTTA
LOC_Os10g02790
OsAffx.425.1.S1_at--580--7391Chr10:1100294..1100405 (25 bp)
GTGAGGCTGCCATTCAAGCAATTCA
LOC_Os10g02790
OsAffx.425.1.S1_at--985--10011Chr10:1100429..1100453 (25 bp)
TAGAGGCACTAATTCCAACGGTTCA
LOC_Os10g02790
OsAffx.425.1.S1_at--1052--9191Chr10:1100442..1100554 (25 bp)
TCCAACGGTTCAAGAGGCATTCATG
LOC_Os10g02790
OsAffx.425.1.S1_at--281--8293Chr10:1100545..1100569 (25 bp)
GGCATTCATGGAGTATTCTCCACAC
LOC_Os10g02790
OsAffx.425.1.S1_at--125--6871Chr10:1100557..1100581 (25 bp)
GTATTCTCCACACAAAGCAAACCGA
LOC_Os10g02790
OsAffx.425.1.S1_at--1090--1471Chr10:1100572..1100596 (25 bp)
AGCAAACCGAATGTTTCTAACACTT
LOC_Os10g02790
OsAffx.425.1.S1_at--241--2471Chr10:1100636..1100660 (25 bp)
AACAACTTCAAGATTCCTCACATGA
LOC_Os10g02790
OsAffx.425.1.S1_at--391--5571Chr10:1100675..1100699 (25 bp)
GAAAGAGAAGATCGGCTACCAACTT
LOC_Os10g02790
OsAffx.425.1.S1_at--876--4851Chr10:1100689..1100713 (25 bp)
GCTACCAACTTCTATCCATTGTCAA
LOC_Os10g02790
OsAffx.425.1.S1_at--320--571Chr10:1100702..1100726 (25 bp)
ATCCATTGTCAACCATCTTTGCTAG
LOC_Os10g02790
Target Sequence 
ACAGGATAATGCACCTTCCCATTTAAAATTGGATGATCTGTTGTTTTGTGAGGCTGCCATTCAAGCAATTCAATACAAGA
AGAATGCAAAAACAGTAGAGGCACTAATTCCAACGGTTCAAGAGGCATTCATGGAGTATTCTCCACACAAAGCAAACCGA
ATGTTTCTAACACTTCAAAGTGTTTTGAAGGAAGCTATGAAGGTGAAAGGAAGCAACAACTTCAAGATTCCTCACATGAA
AAAAGGAACATTAGAAAGAGAAGATCGGCTACCAACTTCTATCCATTGTCAACCATCTTTGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis