Browse Element(s) Details


OsAffx.4315.1.S1_at

Description tigr:9633.m01120
TID=OsAffx.4315.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1255011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12490Os.52122.1.S1_at11/115+7150499..7155887transporter, putative, expressed
LOC_Os05g12500NANA5+7163380..7163658hypothetical protein
LOC_Os05g12510OsAffx.26857.1.S1_at11/115+7172070..7174357hypothetical protein
LOC_Os05g12524NANA5+7176206..7176920NA
LOC_Os05g12540OsAffx.26858.1.S1_at11/115+7178367..7178738hypothetical protein
LOC_Os05g12540OsAffx.17095.1.S1_at1/115+7178367..7178738hypothetical protein
LOC_Os05g12550OsAffx.4315.1.S1_at11/115+7179441..7182024expressed protein
LOC_Os05g12550Os.53111.1.S1_at1/115+7179441..7182024expressed protein
LOC_Os05g12560OsAffx.28800.1.S1_x_at11/115+7186965..7189124hypothetical protein
LOC_Os05g12570OsAffx.26859.1.S1_at11/115+7191042..7196018NB-ARC domain containing protein, expressed
LOC_Os05g12580Os.11520.1.S1_at1/115+7198872..7199210hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4315.1.S1_at--956--2071Chr05:7180161..7180185 (25 bp)
ACATACCTATTTTGGATGCGATGCA
LOC_Os05g12550
OsAffx.4315.1.S1_at--137--1191Chr05:7180136..7180160 (25 bp)
AGTACCCATGTACGGTTGCTATCTA
LOC_Os05g12550
OsAffx.4315.1.S1_at--756--2611Chr05:7179897..7180103 (25 bp)
AACCGCGGAAGTGCTAGCCGATTCC
LOC_Os05g12550
OsAffx.4315.1.S1_at--390--7871Chr05:7179854..7179878 (25 bp)
GGTATTGCTGAGGATGCCCTAGTAA
LOC_Os05g12550
OsAffx.4315.1.S1_at--446--4651Chr05:7179750..7179774 (25 bp)
GCGTCCGTTCTTAAGCATCGTGGAA
LOC_Os05g12550
OsAffx.4315.1.S1_at--263--1611Chr05:7179708..7179732 (25 bp)
AGCTGGAGAAATCCGGCTCGACCTC
LOC_Os05g12550
OsAffx.4315.1.S1_at--748--5911Chr05:7179671..7179695 (25 bp)
GAGAAGTTCGAATTCCGACCGAGAA
LOC_Os05g12550
OsAffx.4315.1.S1_at--424--7551Chr05:7179614..7179638 (25 bp)
GGGCCAAATCCACAAAATATCCGAG
LOC_Os05g12550
OsAffx.4315.1.S1_at--1022--2351Chr05:7179578..7179602 (25 bp)
AAACCCTCAAAGACGGATAGCCTCA
LOC_Os05g12550
OsAffx.4315.1.S1_at--503--2671Chr05:7179523..7179547 (25 bp)
AAGCGATGGGCAGGCACCGTCCAGA
LOC_Os05g12550
OsAffx.4315.1.S1_at--1016--1771Chr05:7179508..7179532 (25 bp)
ACCGTCCAGATCCAAAGGTGGCATC
LOC_Os05g12550
Target Sequence 
ACATACCTATTTTGGATGCGATGCAAGTACCCATGTACGGTTGCTATCTAAAGGACATTCTCAACAACAAGCGACCGATG
CCAACCGCGGAAGTGCTAGCCGATTCCTCGGTCCGTTACCCAGCAGGTATTGCTGAGGATGCCCTAGTAAAAATTCGGGA
TTTCTTCATCCTGGTGGACTTTGTGGTCTTAGACATAAACTCTGACAAGGAGACGCCGCTCATCTTGGGGCGTCCGTTCT
TAAGCATCGTGGAAGCCAACATTGATGTAGGAGCTGGAGAAATCCGGCTCGACCTCAATGGAAAGGAGGAGAAGTTCGAA
TTCCGACCGAGAATAGAACAATGCTCTATGGTGAAGATCAAGTACGGGCCAAATCCACAAAATATCCGAGAGGTCGAAGT
TAAACCCTCAAAGACGGATAGCCTCATTGCATTCATGAAGAACTTCCTGGAGAAGGAAGCGATGGGCAGGCACCGTCCAG
ATCCAAAGGTGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis