Browse Element(s) Details


OsAffx.4340.1.S1_at

Description tigr:9633.m01307
TID=OsAffx.4340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1487011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14820OsAffx.14697.1.S1_at10/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14820Os.51403.1.S1_at1/115+8406710..8408708lysine and histidine specific transporter, putative, expressed
LOC_Os05g14830NANA5+8409835..8410271hypothetical protein
LOC_Os05g14840OsAffx.4339.1.S1_at9/115+8413389..8414614hypothetical protein
LOC_Os05g14850Os.52782.1.S1_at1/115+8417761..8418776hypothetical protein
LOC_Os05g14860OsAffx.14699.1.S1_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14860OsAffx.14699.1.S1_s_at11/115+8419737..8425022Ubiquitin ligase SINAT3, putative, expressed
LOC_Os05g14870OsAffx.4340.1.S1_at11/115+8426921..8427440hypothetical protein
LOC_Os05g14880Os.53594.1.S1_at11/115+8429808..8431098expressed protein
LOC_Os05g14890OsAffx.14700.1.S1_at11/115+8434877..8436271hypothetical protein
LOC_Os05g14900OsAffx.26894.1.S1_at11/115+8439795..8441746expressed protein
LOC_Os05g14920OsAffx.14701.1.S1_at11/115+8451292..8451924hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4340.1.S1_at--490--1575Chr11:11432501..11432521 (21 bp)
AGCTACGCATTGAACATGGCCTCAT
NONE
OsAffx.4340.1.S1_at--99--4132Chr08:23686901..23686921 (21 bp)
CGCATTGAACATGGCCTCATGGGAT
NONE
OsAffx.4340.1.S1_at--1102--2111Chr05:8426964..8426988 (25 bp)
ACATGGCCTCATGGGATACGATCCC
LOC_Os05g14870
OsAffx.4340.1.S1_at--943--311Chr05:8426979..8427003 (25 bp)
ATACGATCCCGGCTTTTGAACACTG
LOC_Os05g14870
OsAffx.4340.1.S1_at--527--9311Chr05:8426985..8427009 (25 bp)
TCCCGGCTTTTGAACACTGTGCAGA
LOC_Os05g14870
OsAffx.4340.1.S1_at--948--8291Chr05:8426989..8427013 (25 bp)
GGCTTTTGAACACTGTGCAGACAGA
LOC_Os05g14870
OsAffx.4340.1.S1_at--219--10751Chr05:8426994..8427018 (25 bp)
TTGAACACTGTGCAGACAGAAACTG
LOC_Os05g14870
OsAffx.4340.1.S1_at--54--5552Chr05:8427012..8427391 (25 bp)
GAAACTGCACACCAAAGATTCGATG
LOC_Os05g14870
OsAffx.4340.1.S1_at--691--5111Chr05:8427378..8427397 (20 bp)
GCACACCAAAGATTCGATGCACTGG
LOC_Os05g14870
OsAffx.4340.1.S1_at--971--6571Chr05:8427383..8427407 (25 bp)
GATTCGATGCACTGGAGGCACTTCA
LOC_Os05g14870
OsAffx.4340.1.S1_at--259--9391Chr05:8427386..8427410 (25 bp)
TCGATGCACTGGAGGCACTTCAGAG
LOC_Os05g14870
Target Sequence 
AGCTACGCATTGAACATGGCCTCATGGGATACGATCCCGGCTTTTGAACACTGTGCAGACAGAAACTGCACACCAAAGAT
TCGATGCACTGGAGGCACTTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis