Browse Element(s) Details


OsAffx.4352.1.S1_at

Description tigr:9633.m01425
TID=OsAffx.4352.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1602011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15990NANA5+9005866..9011976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16000OsAffx.14717.1.S1_at10/115+9014838..9016985hypothetical protein
LOC_Os05g16010NANA5+9020747..9022660retrotransposon protein, putative, LINE subclass
LOC_Os05g16020OsAffx.4352.1.S1_at11/115+9031665..9032540Zinc knuckle family protein
LOC_Os05g16030OsAffx.4353.1.S1_at11/115+9033211..9033690hypothetical protein
LOC_Os05g16040OsAffx.14718.1.S1_at10/115+9035283..9038032hypothetical protein
LOC_Os05g16050OsAffx.646.1.S1_at2/115+9040476..9040925expressed protein
LOC_Os05g16060OsAffx.14719.1.S1_at11/115+9043030..9046088hypothetical protein
LOC_Os05g16070OsAffx.14719.1.S1_at1/115+9051033..9054539hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4352.1.S1_at--734--2091Chr05:9031705..9031729 (25 bp)
ACAGGTTGACGCTATGTTACCCCAT
LOC_Os05g16020
OsAffx.4352.1.S1_at--877--1791Chr05:9031851..9031875 (25 bp)
ACCGCCATTGTACAAGCTATGCCGG
LOC_Os05g16020
OsAffx.4352.1.S1_at--978--6211Chr05:9031875..9031899 (25 bp)
GAGGCCGTGGTGATGACCATATTTG
LOC_Os05g16020
OsAffx.4352.1.S1_at--1154--4571Chr05:9031911..9032175 (25 bp)
GCGAAGGCAGCCACCATTGAGCAAT
LOC_Os05g16020
OsAffx.4352.1.S1_at--947--1411Chr05:9032206..9032230 (25 bp)
AGACAATTGGGCACCTGCGGGCATT
LOC_Os05g16020
OsAffx.4352.1.S1_at--955--7571Chr05:9032224..9032248 (25 bp)
GGGCATTCGAGGACTCTTCACAGGG
LOC_Os05g16020
OsAffx.4352.1.S1_at--404--251Chr05:9032291..9032315 (25 bp)
ATATGCCGAGCCACGACTGATGCGT
LOC_Os05g16020
OsAffx.4352.1.S1_at--369--5331Chr05:9032393..9032417 (25 bp)
GAAGTACCACGGCAAATTCGACAAG
LOC_Os05g16020
OsAffx.4352.1.S1_at--614--2331Chr05:9032421..9032445 (25 bp)
AAAGTTCATTGCTACAATTGTCAAG
LOC_Os05g16020
OsAffx.4352.1.S1_at--796--7591Chr05:9032451..9032475 (25 bp)
GGGCATTTCGCTGATGAGTGTCCTA
LOC_Os05g16020
OsAffx.4352.1.S1_at--1112--3852Chr11:2981160..2981600 (25 bp)
CTGATGAGTGTCCTAAGCCGAAGAA
NONE
Target Sequence 
ACAGGTTGACGCTATGTTACCCCATGCTCGAGGAGAACAACTACGGCGTTTGGGCAGTGAAAATGAAAATTTTCATGCGC
GCACAAGGCGTGTGGGCTGCTGTGGAGGGCAACACGGCCGATGAGAAGATGGACCAAATGGCTCTCACCGCCATTGTACA
AGCTATGCCGGAGGCCGTGGTGATGACCATATTTGAGAAGGAGACGGCGAAGGCAGCCACCATTGAGCAATGGGGGGATG
TGTCAGAGATGATGGTGACAAAGACAATTGGGCACCTGCGGGCATTCGAGGACTCTTCACAGGGGCTGCGTCGTGACAAA
GAGGGGGAGCAGCAGCTGTTCGCCGCATATGCCGAGCCACGACTGATGCGTGCTGAGTGGGAGGCCAAGGTTGCTAAAGA
GAGGAGGAGTGGAGGTGGTTCCGGCAGCAGCAGTGGTGGTGACAAGAGGAAGTACCACGGCAAATTCGACAAGGCAAAAG
TTCATTGCTACAATTGTCAAGAGTATGGGCATTTCGCTGATGAGTGTCCTAAGCCGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis