Browse Element(s) Details


OsAffx.4353.1.S1_at

Description tigr:9633.m01426
TID=OsAffx.4353.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1603011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15990NANA5+9005866..9011976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16000OsAffx.14717.1.S1_at10/115+9014838..9016985hypothetical protein
LOC_Os05g16010NANA5+9020747..9022660retrotransposon protein, putative, LINE subclass
LOC_Os05g16020OsAffx.4352.1.S1_at11/115+9031665..9032540Zinc knuckle family protein
LOC_Os05g16030OsAffx.4353.1.S1_at11/115+9033211..9033690hypothetical protein
LOC_Os05g16040OsAffx.14718.1.S1_at10/115+9035283..9038032hypothetical protein
LOC_Os05g16050OsAffx.646.1.S1_at2/115+9040476..9040925expressed protein
LOC_Os05g16060OsAffx.14719.1.S1_at11/115+9043030..9046088hypothetical protein
LOC_Os05g16070OsAffx.14719.1.S1_at1/115+9051033..9054539hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4353.1.S1_at--28--3371Chr05:9033622..9033646 (25 bp)
CACCGCCTCGATGTACATGTTTATC
LOC_Os05g16030
OsAffx.4353.1.S1_at--979--2091Chr05:9033608..9033632 (25 bp)
ACATGTTTATCTGCCATGGGAGCGG
LOC_Os05g16030
OsAffx.4353.1.S1_at--172--10271Chr05:9033571..9033595 (25 bp)
TTTGCAAGAGGAACCGCCGCATGTT
LOC_Os05g16030
OsAffx.4353.1.S1_at--65--731Chr05:9033551..9033575 (25 bp)
ATGTTGAAGGCTCCACTGTTACTGT
LOC_Os05g16030
OsAffx.4353.1.S1_at--300--10471Chr05:9033533..9033557 (25 bp)
TTACTGTCCTCGCAGAGCACGGTGA
LOC_Os05g16030
OsAffx.4353.1.S1_at--9--1511Chr05:9033518..9033542 (25 bp)
AGCACGGTGACGACATAGCTGTCAG
LOC_Os05g16030
OsAffx.4353.1.S1_at--1119--8151Chr05:9033439..9033463 (25 bp)
GGAACATGGTGCTCCGCTTGGTGCC
LOC_Os05g16030
OsAffx.4353.1.S1_at--987--4111Chr05:9033425..9033449 (25 bp)
CGCTTGGTGCCTTCGATGTCCGGGA
LOC_Os05g16030
OsAffx.4353.1.S1_at--561--5751Chr05:9033369..9033393 (25 bp)
GACGGATTGCATGTATTCTGGTTCT
LOC_Os05g16030
OsAffx.4353.1.S1_at--1019--731Chr05:9033359..9033383 (25 bp)
ATGTATTCTGGTTCTGGGTCACCGA
LOC_Os05g16030
OsAffx.4353.1.S1_at--272--4091Chr05:9033304..9033328 (25 bp)
CGACATGCTTGGAGAGGCCGCTTTC
LOC_Os05g16030
Target Sequence 
CACCGCCTCGATGTACATGTTTATCTGCCATGGGAGCGGGAGCGGGGATGGTTTGCAAGAGGAACCGCCGCATGTTGAAG
GCTCCACTGTTACTGTCCTCGCAGAGCACGGTGACGACATAGCTGTCAGGCGGCCCGTGGCCGGCATCGGAGCAGGTGAA
GAGGCTAGTGTTGCGGCACCCGGGGAACATGGTGCTCCGCTTGGTGCCTTCGATGTCCGGGAGGCGGAACAGCTCGCCGG
TGAGCGGGTTGCAGACGGATTGCATGTATTCTGGTTCTGGGTCACCGAGGTGGCTTCCGCGAGTGGCGCCGGTGGCGGCG
ACATGCTTGGAGAGGCCGCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis