Browse Element(s) Details


OsAffx.4381.1.S1_at

Description tigr:9633.m01785
TID=OsAffx.4381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1966011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g19640NANA5+11431573..11431896hypothetical protein
LOC_Os05g19650Os.45173.5.S1_x_at4/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19650Os.45173.1.S1_x_at2/115+11434783..11442721retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g19660OsAffx.4381.1.S1_at11/115+11445251..11445454hypothetical protein
LOC_Os05g19670Os.6727.1.S1_at11/115+11446464..11447381Rhicadhesin receptor precursor, putative, expressed
LOC_Os05g19670Os.20313.1.S1_x_at1/115+11446464..11447381Rhicadhesin receptor precursor, putative, expressed
LOC_Os05g19670Os.20313.2.S1_x_at1/115+11446464..11447381Rhicadhesin receptor precursor, putative, expressed
LOC_Os05g19680NANA5+11451719..11452012hypothetical protein
LOC_Os05g19690OsAffx.14763.1.S1_at11/115+11460878..11461611hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4381.1.S1_at--464--2911Chr05:11445281..11445305 (25 bp)
AAGGATAGCGTAGCCATCGAGCTCC
LOC_Os05g19660
OsAffx.4381.1.S1_at--1160--291Chr05:11445285..11445309 (25 bp)
ATAGCGTAGCCATCGAGCTCCCAGT
LOC_Os05g19660
OsAffx.4381.1.S1_at--195--6971Chr05:11445290..11445314 (25 bp)
GTAGCCATCGAGCTCCCAGTGGAGC
LOC_Os05g19660
OsAffx.4381.1.S1_at--449--9371Chr05:11445297..11445321 (25 bp)
TCGAGCTCCCAGTGGAGCGGATCGA
LOC_Os05g19660
OsAffx.4381.1.S1_at--816--1091Chr05:11445307..11445331 (25 bp)
AGTGGAGCGGATCGAGGCTGGCCTC
LOC_Os05g19660
OsAffx.4381.1.S1_at--367--911Chr05:11445321..11445345 (25 bp)
AGGCTGGCCTCATCGGTGAGCGCAA
LOC_Os05g19660
OsAffx.4381.1.S1_at--836--8451Chr05:11445325..11445349 (25 bp)
TGGCCTCATCGGTGAGCGCAAATCA
LOC_Os05g19660
OsAffx.4381.1.S1_at--442--3551Chr05:11445331..11445355 (25 bp)
CATCGGTGAGCGCAAATCAAGGCTA
LOC_Os05g19660
OsAffx.4381.1.S1_at--1020--8911Chr05:11445337..11445361 (25 bp)
TGAGCGCAAATCAAGGCTAGGGACG
LOC_Os05g19660
OsAffx.4381.1.S1_at--130--5751Chr05:11445358..11445382 (25 bp)
GACGGCTAGCGAGCAAGCCGATGTT
LOC_Os05g19660
OsAffx.4381.1.S1_at--489--1491Chr05:11445369..11445393 (25 bp)
AGCAAGCCGATGTTGGCTTCCCCAA
LOC_Os05g19660
Target Sequence 
AAGGATAGCGTAGCCATCGAGCTCCCAGTGGAGCGGATCGAGGCTGGCCTCATCGGTGAGCGCAAATCAAGGCTAGGGAC
GGCTAGCGAGCAAGCCGATGTTGGCTTCCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis