Browse Element(s) Details


OsAffx.4486.1.S1_at

Description tigr:9633.m02842
TID=OsAffx.4486.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3118010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31160OsAffx.27098.1.S1_at11/115+18045208..18048514Peptide chain release factor 2, putative, expressed
LOC_Os05g31170NANA5+18054681..18056126Eukaryotic aspartyl protease family protein
LOC_Os05g31180OsAffx.4486.1.S1_at10/115+18061807..18062836hypothetical protein
LOC_Os05g31190NANA5+18064936..18065560expressed protein
LOC_Os05g31200OsAffx.27099.1.S1_at10/115+18066640..18069272hypothetical protein
LOC_Os05g31210Os.45957.4.S1_x_at8/115+18069483..18073584retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g31220Os.52749.1.S1_at6/115+18077106..18079883Cell division control protein 48 homolog B, putative
LOC_Os05g31230Os.17230.1.S1_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17230.1.S2_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed
LOC_Os05g31230Os.17183.1.A1_s_at11/115+18080195..18087884N-acetyltransferase ESCO2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4486.1.S1_at--212--4111Chr05:18062777..18062801 (25 bp)
CGACAACACGGCGACAGCTATGGAT
LOC_Os05g31180
OsAffx.4486.1.S1_at--1150--2171Chr05:18062772..18062796 (25 bp)
ACACGGCGACAGCTATGGATCTTGA
LOC_Os05g31180
OsAffx.4486.1.S1_at--85--1572Chr05:18062762..18062786 (25 bp)
AGCTATGGATCTTGAGCTCGAGGTC
LOC_Os05g31180
OsAffx.4486.1.S1_at--251--7831Chr05:18062741..18062765 (25 bp)
GGTCACCATGATGCAGACGCCGAGC
LOC_Os05g31180
OsAffx.4486.1.S1_at--290--6331Chr05:18062732..18062756 (25 bp)
GATGCAGACGCCGAGCAACCTTGGC
LOC_Os05g31180
OsAffx.4486.1.S1_at--189--4511Chr05:18062723..18062747 (25 bp)
GCCGAGCAACCTTGGCGAGCTCACT
LOC_Os05g31180
OsAffx.4486.1.S1_at--420--7631NONE
GGGAGCAAGGATTCGGGACAACAAC
NONE
OsAffx.4486.1.S1_at--126--7911Chr05:18061902..18061925 (24 bp)
GGATTCGGGACAACAACCGTCGGCA
LOC_Os05g31180
OsAffx.4486.1.S1_at--469--2611Chr05:18061888..18061912 (25 bp)
AACCGTCGGCACCACGGAAGACAGT
LOC_Os05g31180
OsAffx.4486.1.S1_at--973--9431Chr05:18061883..18061907 (25 bp)
TCGGCACCACGGAAGACAGTCAAGG
LOC_Os05g31180
OsAffx.4486.1.S1_at--878--9531Chr05:18061837..18061861 (25 bp)
TCTACTCTTGCTTCGGCTTCTAGAT
LOC_Os05g31180
Target Sequence 
CGACAACACGGCGACAGCTATGGATCTTGAGCTCGAGGTCACCATGATGCAGACGCCGAGCAACCTTGGCGAGCTCACTG
GGGAGCAAGGATTCGGGACAACAACCGTCGGCACCACGGAAGACAGTCAAGGTGGGGGCAACCGCCGTGCCTCTCTACTC
TTGCTTCGGCTTCTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis