Browse Element(s) Details


OsAffx.4491.1.S1_at

Description tigr:9633.m02878
TID=OsAffx.4491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g315209/11hypothetical protein
LOC_Os10g407901/11expressed protein
LOC_Os09g267001/11Choline/ethanolamine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31480Os.5094.1.S2_at11/115+18232290..18237299methyltransferase family protein, expressed
LOC_Os05g31480Os.5094.1.S1_at11/115+18232290..18237299methyltransferase family protein, expressed
LOC_Os05g31490Os.47990.1.S1_at11/115+18238050..18242835Golgi transport complex protein, putative, expressed
LOC_Os05g31500NANA5+18244813..18245133hypothetical protein
LOC_Os05g31510OsAffx.26201.1.S1_at6/115+18247628..18250537transposon protein, putative, Mutator sub-class
LOC_Os05g31520OsAffx.4491.1.S1_at9/115+18253197..18256563hypothetical protein
LOC_Os05g31530Os.50205.1.S1_at11/115+18260243..18265939NB-ARC domain containing protein, expressed
LOC_Os05g31530Os.50205.1.S1_x_at11/115+18260243..18265939NB-ARC domain containing protein, expressed
LOC_Os05g31540NANA5+18270068..18270400retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g31550OsAffx.14901.1.S1_at11/115+18273181..18276849NB-ARC domain containing protein
LOC_Os05g31560NANA5+18281364..18281823retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0004103molecular_functioncholine kinase activity
GO:0016301molecular_functionkinase activity
GO:0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4491.1.S1_at--328--4271Chr05:18255451..18255475 (25 bp)
CCTGTCGGAGATCATCGAGTTGTAC
LOC_Os05g31520
OsAffx.4491.1.S1_at--935--9371NONE
TCGAGTTGTACTCGCAGGACGACAT
NONE
OsAffx.4491.1.S1_at--861--611Chr05:18254693..18254717 (25 bp)
ATGCTGGAAGACCTCTTGAAGAGAT
LOC_Os05g31520
OsAffx.4491.1.S1_at--987--291Chr05:18253597..18253621 (25 bp)
ATAACCTTCTGTCACTGAAACTACT
LOC_Os05g31520
OsAffx.4491.1.S1_at--282--8971Chr05:18253582..18253606 (25 bp)
TGAAACTACTACCAATTTACCGCAA
LOC_Os05g31520
OsAffx.4491.1.S1_at--205--9971Chr05:18253565..18253589 (25 bp)
TACCGCAAACTTAGTGGAAACCACA
LOC_Os05g31520
OsAffx.4491.1.S1_at--982--2553Chr10:21578692..21578716 (25 bp)
AACTGTAATTTACTGCTTGCAGTGC
LOC_Os10g40790
OsAffx.4491.1.S1_at--532--9051Chr05:18253524..18253548 (25 bp)
TGCAGTGCTGAAGGTCTCCGCAGAA
LOC_Os05g31520
OsAffx.4491.1.S1_at--1041--9031NONE
TGCAGCAAGCTCAAAGAACCTCATT
NONE
OsAffx.4491.1.S1_at--578--3211Chr05:18253251..18253275 (25 bp)
CAAGGGCTTCTTGACCATGAAGGAT
LOC_Os05g31520
OsAffx.4491.1.S1_at--870--8591Chr05:18253227..18253251 (25 bp)
TGGTGACATTTCAGTCCTATTCCAC
LOC_Os05g31520
Target Sequence 
CCTGTCGGAGATCATCGAGTTGTACTCGCAGGACGACATGCATGCTGGTGCCCTTCACCCATCTTTCAATTTTTCCAAGG
ATGACATAAGTCATGATATGTTACATGCTGGGCATAAGGAATGCGTAATGCTGGAAGACCTCTTGAAGAGATGCAGAAGA
AGGAGAGCAAAATTAAAATTATATAACCTTCTGTCACTGAAACTACTACCAATTTACCGCAAACTTAGTGGAAACCACAA
CTGTAATTTACTGCTTGCAGTGCTGAAGGTCTCCGCAGAAGATGGCAAGGGCAACAAGTCTTCTGTGACTGTTCATTTGT
ATGGCCCAAATACAGACTTGGTGGTTGATCGGAAGAGGGAATTGCAGCAAGCTCAAAGAACCTCATTGTTTTTTCAAATA
TTCAAGGGCTTCTTGACCATGAAGGATGGTGACATTTCAGTCCTATTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis