Browse Element(s) Details


OsAffx.4492.1.S1_at

Description tigr:9633.m02899
TID=OsAffx.4492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sodiumhydrogen exchanger family protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3173011/11Sodium/hydrogen exchanger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31690Os.55351.1.S1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.25394.1.A1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.55351.1.S1_x_at8/115+18367037..18370882expressed protein
LOC_Os05g31700NANA5+18375781..18375993transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g31710Os.54537.1.S1_at11/115+18382240..18383634expressed protein
LOC_Os05g31720Os.50440.1.S1_at10/115+18385822..18389490zinc finger and C2 domain protein, putative, expressed
LOC_Os05g31730OsAffx.4492.1.S1_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31730OsAffx.4492.1.S1_x_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31740Os.54911.1.S1_at11/115+18406188..18408080Cytochrome P450 family protein, expressed
LOC_Os05g31750Os.22783.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31750Os.38017.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31760Os.8259.1.S1_at11/115+18419551..18421971Annexin family protein, expressed
LOC_Os05g31770Os.13632.1.S1_at11/115+18421530..18424750Tetratricopeptide repeat protein 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005451molecular_functionmonovalent cation:proton antiporter activity
GO:0015385molecular_functionsodium:hydrogen antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4492.1.S1_at--275--9431Chr05:18394941..18394965 (25 bp)
TCGTGTTCGGGCTGGCCATGCCGCG
LOC_Os05g31730
OsAffx.4492.1.S1_at--15--2791Chr05:18394885..18394909 (25 bp)
AAGGTGGCACCGCTGGTGTCCGGGC
LOC_Os05g31730
OsAffx.4492.1.S1_at--590--4071Chr05:18394836..18394860 (25 bp)
CGAGCGGCCTGCACACGGACATCGA
LOC_Os05g31730
OsAffx.4492.1.S1_at--256--7551Chr05:18394768..18394792 (25 bp)
GTGGCCGTGGCCATCGGCGGGAAGT
LOC_Os05g31730
OsAffx.4492.1.S1_at--386--9131Chr05:18394518..18394542 (25 bp)
TGCTGGACGACACGACGTTTGCCAT
LOC_Os05g31730
OsAffx.4492.1.S1_at--440--8531Chr05:18394515..18394539 (25 bp)
TGGACGACACGACGTTTGCCATCTT
LOC_Os05g31730
OsAffx.4492.1.S1_at--213--5631Chr05:18394510..18394534 (25 bp)
GACACGACGTTTGCCATCTTCGTGA
LOC_Os05g31730
OsAffx.4492.1.S1_at--614--5731Chr05:18394505..18394529 (25 bp)
GACGTTTGCCATCTTCGTGATCATG
LOC_Os05g31730
OsAffx.4492.1.S1_at--763--3551Chr05:18394496..18394520 (25 bp)
CATCTTCGTGATCATGGCGCTAACG
LOC_Os05g31730
OsAffx.4492.1.S1_at--1056--3631Chr05:18394493..18394517 (25 bp)
CTTCGTGATCATGGCGCTAACGACG
LOC_Os05g31730
OsAffx.4492.1.S1_at--1158--10531Chr05:18394450..18394474 (25 bp)
TTCATGACGGCGCTCTACCGGCGCA
LOC_Os05g31730
Target Sequence 
TCGTGTTCGGGCTGGCCATGCCGCGGGAGGGCGGCCTCGCGGAGCGCGCGGGCGAGAAGGTGGCACCGCTGGTGTCCGGG
CTGATGCTGCCGCTCTACTTCGCCACGAGCGGCCTGCACACGGACATCGACAACGTCCGTGGCGCGGCCGCGTGGGGCAT
GGTCGCGCTCGTCGTGGCCGTGGCCATCGGCGGGAAGTTCGCCGGGACGTTCGCGGTGGCCGCCGGCACCGGCATGCCCA
GGCGCGAGGCCGCCGCCCTCGGCGTGGCCATGAGCGCCAAGGGGCTCGTCGAGCTCATCGTGCTCAACATCGGCAAGGAG
AGGAAGGTGCTGGACGACACGACGTTTGCCATCTTCGTGATCATGGCGCTAACGACGACGGTGCTCGCGACGCCGTTCAT
GACGGCGCTCTACCGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis