Browse Element(s) Details


OsAffx.4510.1.S1_at

Description tigr:9633.m03129
TID=OsAffx.4510.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Ran GTPase activating protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3387011/11Ran GTPase activating protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33840Os.7505.2.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840Os.7505.1.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840OsAffx.3991.1.S1_at1/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33850Os.16982.1.S1_at11/115+19885722..19890373UBA/TS-N domain containing protein, expressed
LOC_Os05g33860NANA5+19894208..19895259hypothetical protein
LOC_Os05g33870OsAffx.4510.1.S1_at11/115+19898356..19899306Ran GTPase activating protein, putative
LOC_Os05g33880Os.11188.1.S1_at10/115+19900616..19904541Cystatin domain containing protein, expressed
LOC_Os05g33890Os.32863.1.S1_at11/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33890Os.25587.2.S1_at3/115+19905608..19910939Microtubule associated protein containing protein, expressed
LOC_Os05g33900OsAffx.4511.1.S1_s_at11/115+19914384..19916416nodulin, putative, expressed
LOC_Os05g33900OsAffx.4511.1.S1_at11/115+19914384..19916416nodulin, putative, expressed
LOC_Os05g33910OsAffx.19817.1.S1_x_at10/115+19919542..19920089MATE efflux family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0000072biological_processM phase specific microtubule process
GO:0006606biological_processprotein import into nucleus
GO:0006913biological_processnucleocytoplasmic transport
GO:0005635cellular_componentnuclear envelope
GO:0009504cellular_componentcell plate
GO:0005098molecular_functionRan GTPase activator activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4510.1.S1_at--803--3631Chr05:19898567..19898591 (25 bp)
CTTCTACCGAGAAGCTTAAGGTTCT
LOC_Os05g33870
OsAffx.4510.1.S1_at--274--10471Chr05:19898582..19898606 (25 bp)
TTAAGGTTCTCCACTTCCACAATAA
LOC_Os05g33870
OsAffx.4510.1.S1_at--531--4871Chr05:19898626..19898646 (21 bp)
GCTATGTTTGTTGCGGAGATGATCT
LOC_Os05g33870
OsAffx.4510.1.S1_at--641--6031Chr05:19898765..19898784 (20 bp)
GAGATGATCTTACTCGGTGACCTCA
LOC_Os05g33870
OsAffx.4510.1.S1_at--243--10471Chr05:19898769..19898793 (25 bp)
TTACTCGGTGACCTCAATCTTGAGA
LOC_Os05g33870
OsAffx.4510.1.S1_at--209--8251Chr05:19898799..19898823 (25 bp)
GGCACATTAGCAATTGTCAATACCC
LOC_Os05g33870
OsAffx.4510.1.S1_at--1116--3071Chr05:19898817..19898841 (25 bp)
AATACCCGCAAACAATTGACACCTC
LOC_Os05g33870
OsAffx.4510.1.S1_at--752--2291Chr05:19898883..19898907 (25 bp)
AAAGAAGCCCAAGCTTTGGCAGAAT
LOC_Os05g33870
OsAffx.4510.1.S1_at--424--10851Chr05:19898898..19898922 (25 bp)
TTGGCAGAATGCCTAACAACACTTC
LOC_Os05g33870
OsAffx.4510.1.S1_at--948--4291Chr05:19898909..19898933 (25 bp)
CCTAACAACACTTCAATCACTCAAA
LOC_Os05g33870
OsAffx.4510.1.S1_at--1092--6251Chr05:19899054..19899226 (25 bp)
GATGGGAGCTCGAATGACCCTGAGA
LOC_Os05g33870
Target Sequence 
CTTCTACCGAGAAGCTTAAGGTTCTCCACTTCCACAATAACATGATGGGGGATGAAGGTGCTATGTTTGTTGCGGAGATG
ATCTTACTCGGTGACCTCAATCTTGAGAATAAGGGCACATTAGCAATTGTCAATACCCGCAAACAATTGACACCTCAGAT
TGAGGTTCTTGAAATGGCTAGAAATAAGATTAACGCCAAAGAAGCCCAAGCTTTGGCAGAATGCCTAACAACACTTCAAT
CACTCAAAAAGTTGACATTGGCTGAAAATGGACTGAAGGATGATGGTGCTGTGGTAATTGCAAAAGCATTGGAAGATGGG
CACCAGGATCTGAAGGAGCTTGATGTTAGCAAAGAATATGTTGCGGAGGATGGGAGCTCGAATGACCCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis