Browse Element(s) Details


OsAffx.4537.1.S1_at

Description tigr:9633.m03346
TID=OsAffx.4537.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3590010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g35840OsAffx.27189.1.S1_at11/115+21183159..21184439hypothetical protein
LOC_Os05g35850OsAffx.27190.1.S1_at11/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.22510.1.S1_s_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35850OsAffx.20967.1.S1_x_at1/115+21186034..21187616hypothetical protein
LOC_Os05g35860NANA5+21189519..21194570retrotransposon protein, putative, unclassified
LOC_Os05g35870NANA5+21196280..21196808hypothetical protein
LOC_Os05g35880Os.47463.1.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35880Os.14491.2.S1_x_at5/115+21197909..21201607transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g35890NANA5+21204195..21207526transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g35900OsAffx.4537.1.S1_at10/115+21208886..21209377hypothetical protein
LOC_Os05g35910NANA5+21211761..21212559hypothetical protein
LOC_Os05g35920OsAffx.27192.1.S1_x_at11/115+21213580..21214003hypothetical protein
LOC_Os05g35930NANA5+21217261..21218032expressed protein
LOC_Os05g35940OsAffx.27194.1.S1_at11/115+21221263..21221565hypothetical protein
LOC_Os05g35950OsAffx.14978.1.S1_at11/115+21222914..21224000hypothetical protein
LOC_Os05g35950OsAffx.27186.1.S1_at1/115+21222914..21224000hypothetical protein
LOC_Os05g35960OsAffx.14979.1.S1_at11/115+21228377..21229313hypothetical protein
LOC_Os05g35970Os.49636.1.S1_at11/115+21230060..21230874expressed protein
LOC_Os05g35980Os.11957.1.S1_at11/115+21232644..21237274expressed protein
LOC_Os05g35980Os.54692.1.S1_at11/115+21232644..21237274expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4537.1.S1_at--958--391Chr05:21208960..21208984 (25 bp)
ATCAGCGGTGGTATCAGCATCGGCA
LOC_Os05g35900
OsAffx.4537.1.S1_at--267--9671Chr05:21208961..21208985 (25 bp)
TCAGCGGTGGTATCAGCATCGGCAT
LOC_Os05g35900
OsAffx.4537.1.S1_at--607--1632Chr08:4446232..4446251 (20 bp)
AGCGGTGGTATCAGCATCGGCATCG
NONE
OsAffx.4537.1.S1_at--438--4931NONE
GCATCGGCATCGCTTAAGGGTGGTG
NONE
OsAffx.4537.1.S1_at--771--11Chr05:21208984..21209194 (25 bp)
ATCGCTTAAGGGTGGTGGCGGCAGA
LOC_Os05g35900
OsAffx.4537.1.S1_at--789--4691Chr05:21209187..21209211 (25 bp)
GCGGCAGAGCGGATCTATCACCGAC
LOC_Os05g35900
OsAffx.4537.1.S1_at--227--8271Chr05:21209189..21209213 (25 bp)
GGCAGAGCGGATCTATCACCGACCA
LOC_Os05g35900
OsAffx.4537.1.S1_at--444--1371Chr05:21209192..21209216 (25 bp)
AGAGCGGATCTATCACCGACCACTG
LOC_Os05g35900
OsAffx.4537.1.S1_at--272--4691Chr05:21209195..21209219 (25 bp)
GCGGATCTATCACCGACCACTGTGG
LOC_Os05g35900
OsAffx.4537.1.S1_at--684--6151Chr05:21209251..21209275 (25 bp)
GAGGTCGGATTCATCGTCGACGACC
LOC_Os05g35900
OsAffx.4537.1.S1_at--479--1031Chr05:21209252..21209276 (25 bp)
AGGTCGGATTCATCGTCGACGACCA
LOC_Os05g35900
Target Sequence 
ATCAGCGGTGGTATCAGCATCGGCATCGCTTAAGGGTGGTGGCGGCAGAGCGGATCTATCACCGACCACTGTGGGGAGGC
CAGATCCGTCGCCTGCCACCGCGGCGAGGTCGGATTCATCGTCGACGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis