Browse Element(s) Details


OsAffx.4548.1.S1_at

Description tigr:9633.m03482
TID=OsAffx.4548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3768011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37630OsAffx.4547.1.S1_at11/115+21939850..21940554hypothetical protein
LOC_Os05g37640Os.51802.1.S1_at11/115+21947505..21948151expressed protein
LOC_Os05g37650OsAffx.30938.1.S1_at2/115+21955043..21955417hypothetical protein
LOC_Os05g37660Os.18463.1.S1_at11/115+21956892..21958778AER, putative, expressed
LOC_Os05g37670NANA5+21963338..21963907hypothetical protein
LOC_Os05g37680OsAffx.4548.1.S1_at11/115+21964784..21965479transposon protein, putative, unclassified
LOC_Os05g37690Os.17042.1.S1_at11/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37690OsAffx.16860.1.S1_at1/115+21977725..21980654Coronatine-insensitive protein 1, putative, expressed
LOC_Os05g37700Os.18881.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.7745.1.S1_at11/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os05g37700Os.23325.1.A1_at1/115+21985304..21989715Glycosyl hydrolase family 3 N terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4548.1.S1_at--769--10591Chr05:21965393..21965417 (25 bp)
TTCTCCCTTCAGACGCATCGGTGGT
LOC_Os05g37680
OsAffx.4548.1.S1_at--1149--9311Chr05:21965390..21965414 (25 bp)
TCCCTTCAGACGCATCGGTGGTGGC
LOC_Os05g37680
OsAffx.4548.1.S1_at--379--5811Chr05:21965249..21965273 (25 bp)
GACCCGCGGGACTAAGCGAGGGTGT
LOC_Os05g37680
OsAffx.4548.1.S1_at--22--2011Chr05:21965239..21965263 (25 bp)
ACTAAGCGAGGGTGTCATGAGCGTC
LOC_Os05g37680
OsAffx.4548.1.S1_at--615--7451Chr05:21965228..21965252 (25 bp)
GTGTCATGAGCGTCGCCACGGCTCG
LOC_Os05g37680
OsAffx.4548.1.S1_at--273--2531Chr05:21965092..21965116 (25 bp)
AACTCCGGCTACTCCAGTGTCGTCC
LOC_Os05g37680
OsAffx.4548.1.S1_at--1049--5731Chr05:21964929..21964953 (25 bp)
GACGGCTACCCGATGGCGCGCCCAA
LOC_Os05g37680
OsAffx.4548.1.S1_at--148--2951Chr05:21964906..21964930 (25 bp)
AAGGCGTGGGCCGTGCTCCACAAGC
LOC_Os05g37680
OsAffx.4548.1.S1_at--335--9111Chr05:21964893..21964917 (25 bp)
TGCTCCACAAGCTCTCTGTCTGCTG
LOC_Os05g37680
OsAffx.4548.1.S1_at--488--4011Chr05:21964847..21964871 (25 bp)
CGTCCTCGTCGAGCCCTCTGATGAT
LOC_Os05g37680
OsAffx.4548.1.S1_at--267--3971Chr05:21964814..21964838 (25 bp)
CGGTGGCGGCCATCGTGTAACGCCC
LOC_Os05g37680
Target Sequence 
TTCTCCCTTCAGACGCATCGGTGGTGGCGGCGGCCGAGGGCTGGAGCGGCGACGGCGGCGTGCAGGCGAAGGCCGCGCCA
CCGCCTGCCCTGTCATCGGAGGGCTTGAGGAGGACGCCGGCAAATCCTGGGGAGGCTACAGGGGGACCCGCGGGACTAAG
CGAGGGTGTCATGAGCGTCGCCACGGCTCGCCACGCTGCTCAGGGCGGCGTGCCTCTCGCCGCGCGCCCGCGCTTGATGC
GCGCGCTCCCCGCCGAGCTGCTCCCGCCCCCGTCACGACTCACGACCGCGTCGTCGTCACCAACTCCGGCTACTCCAGTG
TCGTCCTCTGCCGCGTCGGCGTCCCCGTCCGGCTGTCCCCCTCTTCGTCGACCACAAGGGGACGGCTACCCGATGGCGCG
CCCAAGGCGTGGGCCGTGCTCCACAAGCTCTCTGTCTGCTGCCCGGGGCTCCTCCACGCCGGCGTCCTCGTCGAGCCCTC
TGATGATGGGGCAGGCGGTGGCGGCCATCGTGTAACGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis