Browse Element(s) Details


OsAffx.4598.1.S1_at

Description tigr:9633.m03978
TID=OsAffx.4598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4236010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g42330Os.12338.1.S1_at11/115+24678949..24684544secretory carrier membrane protein family protein, putative, expressed
LOC_Os05g42340NANA5+24691505..24692419hypothetical protein
LOC_Os05g42350Os.8150.1.S1_at11/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42350Os.8150.1.S1_a_at10/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42350Os.8150.2.S1_x_at10/115+24694152..24698833Sulfite reductase, putative, expressed
LOC_Os05g42360OsAffx.4598.1.S1_at10/115+24700443..24702099expressed protein
LOC_Os05g42370OsAffx.4599.1.S1_at11/115+24707749..24713388retrotransposon protein, putative, unclassified
LOC_Os05g42370OsAffx.15327.1.S1_at1/115+24707749..24713388retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4598.1.S1_at--509--4491Chr05:24702031..24702051 (21 bp)
GCCGTCATGGCGTCGTCCATGAATG
LOC_Os05g42360
OsAffx.4598.1.S1_at--893--8351NONE
GGCGTCGTCCATGAATGACTTACAT
NONE
OsAffx.4598.1.S1_at--825--5331Chr05:24700870..24700891 (22 bp)
GAAGTCACAAGCAGCACTAATCCGT
LOC_Os05g42360
OsAffx.4598.1.S1_at--771--1511Chr05:24700861..24700885 (25 bp)
AGCAGCACTAATCCGTGGAAATCCA
LOC_Os05g42360
OsAffx.4598.1.S1_at--576--8151Chr05:24700845..24700869 (25 bp)
GGAAATCCAATGTAAACCAATCAAT
LOC_Os05g42360
OsAffx.4598.1.S1_at--32--1711Chr05:24700830..24700854 (25 bp)
ACCAATCAATTGCAACTGCATTTAT
LOC_Os05g42360
OsAffx.4598.1.S1_at--1065--131Chr05:24700680..24700700 (21 bp)
ATATAAGAGGTATCCAAAGGCAAGG
LOC_Os05g42360
OsAffx.4598.1.S1_at--327--4071Chr05:24700507..24700531 (25 bp)
CGAGGAGCCTGAGCTTCAGTGTTGC
LOC_Os05g42360
OsAffx.4598.1.S1_at--854--8911Chr05:24700498..24700522 (25 bp)
TGAGCTTCAGTGTTGCCGCCATTTG
LOC_Os05g42360
OsAffx.4598.1.S1_at--100--3591Chr05:24700479..24700503 (25 bp)
CATTTGCTTCCTCGCTTCTTGGTTG
LOC_Os05g42360
OsAffx.4598.1.S1_at--1098--3631Chr05:24700473..24700497 (25 bp)
CTTCCTCGCTTCTTGGTTGACTGAT
LOC_Os05g42360
Target Sequence 
GCCGTCATGGCGTCGTCCATGAATGACTTACATTGTGAAACTGATGAAGTCACAAGCAGCACTAATCCGTGGAAATCCAA
TGTAAACCAATCAATTGCAACTGCATTTATATATAAGAGGTATCCAAAGGCAAGGGCGGTCAAGGACGCGGCGGCGGCGG
CGGCGGCGGCGAAGGCCGGCGCAGCCACCGGCGCGTCGGACGTCGGGGAAGGAGCCGGCGCGTCGGCGGCGGACGCCGTG
CCGACCAGCGACGTCGCCAGGACGGCCGCGGCCGCTGCCACGGCGAGGAGCCTGAGCTTCAGTGTTGCCGCCATTTGCTT
CCTCGCTTCTTGGTTGACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis