Browse Element(s) Details


OsAffx.4640.1.S1_x_at

Description tigr:9633.m04383
TID=OsAffx.4640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4662011/11Chaperone protein dnaJ 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os05g46590OsAffx.15129.1.S1_at11/115+26889094..26889699hypothetical protein
LOC_Os05g46600OsAffx.27341.1.S1_at11/115+26890405..26891228hypothetical protein
LOC_Os05g46610OsAffx.4639.1.S1_at11/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46610Os.57514.1.S1_x_at1/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46620OsAffx.4640.1.S1_x_at11/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46620Os.7168.1.S1_at10/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46630Os.8550.1.S1_x_at11/115+26912470..26915901expressed protein
LOC_Os05g46640OsAffx.27342.1.S1_at11/115+26916366..26917351hypothetical protein
LOC_Os05g46650NANA5+26918379..26918819hypothetical protein
LOC_Os05g46660NANA5+26922489..26924411transposon protein, putative, Mutator sub-class
LOC_Os05g46670NANA5+26927289..26927726transposon protein, putative, unclassified
LOC_Os05g46680OsAffx.15130.1.S1_at11/115+26935282..26935895hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4640.1.S1_x_at--468--731Chr05:26910041..26910065 (25 bp)
ATGTTGGACAGCTTGCACTGGCATC
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--418--1291Chr05:26909781..26909805 (25 bp)
AGATCGACTTCAACCATTTGTGGAT
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--1141--5391Chr05:26909720..26909744 (25 bp)
GAAGCTCAGCGGTTATCCCATGCAG
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--182--5071Chr05:26909439..26909462 (24 bp)
GCAGCTTTTGGCGAGGCTATGCTCA
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--754--4871Chr05:26909424..26909448 (25 bp)
GCTATGCTCACCACTATTGGCTATA
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--889--1411Chr05:26909213..26909401 (25 bp)
AGAACTTGGAAAGAGCGCTATCGCT
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--235--4871Chr05:26909197..26909221 (25 bp)
GCTATCGCTCTGATGCAGCTACAAG
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--1159--2791Chr05:26909103..26909127 (25 bp)
AAGATGCCATGCTTAGTTACCTATG
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--1132--2171Chr05:26909050..26909074 (25 bp)
ACACTTACACATGTTTGCCAAGCAG
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--989--1811Chr05:26908891..26908915 (25 bp)
ACGCCAGTGTCCCAAAAGATGTTCT
LOC_Os05g46620
OsAffx.4640.1.S1_x_at--504--4931Chr05:26908412..26908863 (25 bp)
GCTTGGGACGATATTCCAGCATCTT
LOC_Os05g46620
Target Sequence 
ATGTTGGACAGCTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGAAAACTTAAACAGTCAAGAAGCAAGAGGGAAG
GTTCAAGAGAAAATTAAAGAGTTACAAAAAGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATT
TGTGGATGAGAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGCTTTTGGCGAGG
CTATGCTCACCACTATTGGCTATATTTATGTGCGACAAGCAGCGAGAGAACTTGGAAAGAGCGCTATCGCTCTGATGCAG
CTACAAGAAGGGATGAAAAAGATGGAGGAAAGTGACAATAAGGAGGACCAGATTATGAAGAGTTTCGAGGAGAAAAAAGA
TGCCATGCTTAGTTACCTATGGAAAATTAATGTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAGCAGTTTTGA
AAGACGCCAGTGTCCCAAAAGATGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATTCCAGCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4640.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis