Browse Element(s) Details


OsAffx.4666.1.S1_at

Description tigr:9633.m04653
TID=OsAffx.4666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=umecyanin (umc)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4958011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49550OsAffx.19542.3.S1_x_at4/115+28334753..28340721retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49550OsAffx.9949.1.S1_at1/115+28334753..28340721retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49560Os.28943.1.S1_x_at4/115+28342813..28347464retrotransposon protein, putative, unclassified
LOC_Os05g49570NANA5+28347785..28352529retrotransposon protein, putative, unclassified
LOC_Os05g49580OsAffx.4666.1.S1_at11/115+28360229..28361005Plastocyanin-like domain containing protein, expressed
LOC_Os05g49590Os.27654.1.S1_at11/115+28361840..28369659phytochrome A supressor spa1, putative, expressed
LOC_Os05g49600NANA5+28373561..28378059retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49610Os.47912.1.S1_at11/115+28380828..28382748membrane associated salt-inducible protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4666.1.S1_at--315--8191Chr05:28360885..28360909 (25 bp)
GGAAGAAGCTATCGGCCACACGGTC
LOC_Os05g49580
OsAffx.4666.1.S1_at--738--2171Chr05:28360868..28360892 (25 bp)
ACACGGTCAATAAAGAGAGCGGCGA
LOC_Os05g49580
OsAffx.4666.1.S1_at--573--5931Chr05:28360836..28360860 (25 bp)
GAGCAGGACGCAGTACGCCTTCTTG
LOC_Os05g49580
OsAffx.4666.1.S1_at--525--8031Chr05:28360766..28360790 (25 bp)
GGAGTTTACCACATCATCGGCGCCG
LOC_Os05g49580
OsAffx.4666.1.S1_at--387--7531Chr05:28360734..28360758 (25 bp)
GTGGCGGATGGCTCCCAACAAGACC
LOC_Os05g49580
OsAffx.4666.1.S1_at--76--2471Chr05:28360718..28360742 (25 bp)
AACAAGACCTACTACGCGGACTGGG
LOC_Os05g49580
OsAffx.4666.1.S1_at--541--9451Chr05:28360581..28360696 (25 bp)
TCGGCGACAAGCTCATGTTCCTGTA
LOC_Os05g49580
OsAffx.4666.1.S1_at--851--2691Chr05:28360573..28360688 (25 bp)
AAGCTCATGTTCCTGTACCGGAGCG
LOC_Os05g49580
OsAffx.4666.1.S1_at--392--8751Chr05:28360545..28360569 (25 bp)
TGTACAACATCGTGGAGGTGCCGAC
LOC_Os05g49580
OsAffx.4666.1.S1_at--156--9371Chr05:28360509..28360533 (25 bp)
TCGACGCGTGCAGCATGAGGAACAT
LOC_Os05g49580
OsAffx.4666.1.S1_at--703--1771Chr05:28360479..28360503 (25 bp)
ACCGGTGGCAGAACGGGCCGACCAT
LOC_Os05g49580
Target Sequence 
GGAAGAAGCTATCGGCCACACGGTCAATAAAGAGAGCGGCGAGAATGGCGAGCAGGACGCAGTACGCCTTCTTGCTCCTC
TCGGCCTTCATGGCCTCCCTCTTCGCCGGCTCGGCCGCCGGAGTTTACCACATCATCGGCGCCGGCAAGGGGTGGCGGAT
GGCTCCCAACAAGACCTACTACGCGGACTGGGCTCGCACCAGGAACATCAGCGTCGGCGACAAGCTCATGTTCCTGTACC
GGAGCGGGGTGTACAACATCGTGGAGGTGCCGACCAAGGAGCTGTTCGACGCGTGCAGCATGAGGAACATCACAAACCGG
TGGCAGAACGGGCCGACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis