Browse Element(s) Details


Os.27654.1.S1_at

Description gb:AK111749.1
DB_XREF= gi:37988412
TID=Os.27654.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013032J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054J06, full insert sequence.
FL= gb:AK111749.1 gb:AK120171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4959011/11phytochrome A supressor spa1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49550OsAffx.19542.3.S1_x_at4/115+28334753..28340721retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49550OsAffx.9949.1.S1_at1/115+28334753..28340721retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49560Os.28943.1.S1_x_at4/115+28342813..28347464retrotransposon protein, putative, unclassified
LOC_Os05g49570NANA5+28347785..28352529retrotransposon protein, putative, unclassified
LOC_Os05g49580OsAffx.4666.1.S1_at11/115+28360229..28361005Plastocyanin-like domain containing protein, expressed
LOC_Os05g49590Os.27654.1.S1_at11/115+28361840..28369659phytochrome A supressor spa1, putative, expressed
LOC_Os05g49600NANA5+28373561..28378059retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49610Os.47912.1.S1_at11/115+28380828..28382748membrane associated salt-inducible protein, putative, expressed
LOC_Os05g49620Os.55597.1.S1_at11/115+28388530..28389767WRKY DNA binding domain containing protein, expressed
LOC_Os05g49630Os.57143.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.53361.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.7011.1.S2_x_at3/115+28390296..28393865expressed protein
LOC_Os05g49640Os.7011.1.S2_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.7011.1.S2_x_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.53361.1.S1_at2/115+28394345..28397115hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009640biological_processphotomorphogenesis
GO:0005634cellular_componentnucleus
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27654.1.S1_at--68--5271Chr05:28362389..28362413 (25 bp)
GAATCCTAAGGTTGCCATACTGCAT
LOC_Os05g49590
Os.27654.1.S1_at--133--5011Chr05:28362368..28362392 (25 bp)
GCATGGTTGATGCTTAGCTGCCCTT
LOC_Os05g49590
Os.27654.1.S1_at--677--1591Chr05:28362353..28362377 (25 bp)
AGCTGCCCTTGTATATTTCCGTGAA
LOC_Os05g49590
Os.27654.1.S1_at--1142--10191Chr05:28362342..28362366 (25 bp)
TATATTTCCGTGAACGTCTGCCTTC
LOC_Os05g49590
Os.27654.1.S1_at--1139--10631Chr05:28362320..28362344 (25 bp)
TTCGCAGCAGGCAGCTACTCAAGCA
LOC_Os05g49590
Os.27654.1.S1_at--359--2711Chr05:28362300..28362324 (25 bp)
AAGCATCAACCATCCTTCGGTTCTG
LOC_Os05g49590
Os.27654.1.S1_at--539--8651Chr05:28362277..28362301 (25 bp)
TGGGCTTCATTCCATCAGAGCATTT
LOC_Os05g49590
Os.27654.1.S1_at--46--191Chr05:28362256..28362280 (25 bp)
ATTTGCAACACTCAGTTTACCCCAT
LOC_Os05g49590
Os.27654.1.S1_at--500--2731Chr05:28362229..28362253 (25 bp)
AAGCAACCTACAGCGCCAAACTATT
LOC_Os05g49590
Os.27654.1.S1_at--1051--7691Chr05:28362051..28362075 (25 bp)
GGGTCTGTACAGATTAGGGTCACAA
LOC_Os05g49590
Os.27654.1.S1_at--575--1091Chr05:28361912..28361936 (25 bp)
AGTGGCAAGCCGTCTAGTACAGTTA
LOC_Os05g49590
Target Sequence 
GAATCCTAAGGTTGCCATACTGCATGGTTGATGCTTAGCTGCCCTTGTATATTTCCGTGAACGTCTGCCTTCGCAGCAGG
CAGCTACTCAAGCATCAACCATCCTTCGGTTCTGGGCTTCATTCCATCAGAGCATTTGCAACACTCAGTTTACCCCATTC
AAGCAACCTACAGCGCCAAACTATTGGTGGTGAAGAGATCGGCGAACAAAGAGAACAAAGAGATCTTCGAAGGTATGAAA
GGTACTGGCAATTCTTGAAGATGATTGCCACCACCAAAATATTTTGTTTGTATGGCGTTTTGACATAGTACAAGTCAGCA
TTTTAAGGAGGGCCTTAGGGGTCTGTACAGATTAGGGTCACAAAGGGTCGATGTAATATAATATATCATGAAATTGGATA
TGCTTTTGGGCTAAAAAGCCTTACATGATACATCTACTCGAGAAATATCACTGGGAATTAACNCAGTTTTGATGTGCAGT
GGCAAGCCGTCTAGTACAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis