Browse Element(s) Details


Os.55597.1.S1_at

Description gb:AK108389.1
DB_XREF= gi:32993598
TID=Os.55597.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F03, full insert sequence.
FL= gb:AK108389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4962011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49590Os.27654.1.S1_at11/115+28361840..28369659phytochrome A supressor spa1, putative, expressed
LOC_Os05g49600NANA5+28373561..28378059retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49610Os.47912.1.S1_at11/115+28380828..28382748membrane associated salt-inducible protein, putative, expressed
LOC_Os05g49620Os.55597.1.S1_at11/115+28388530..28389767WRKY DNA binding domain containing protein, expressed
LOC_Os05g49630Os.57143.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.53361.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.7011.1.S2_x_at3/115+28390296..28393865expressed protein
LOC_Os05g49640Os.7011.1.S2_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.7011.1.S2_x_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.53361.1.S1_at2/115+28394345..28397115hypothetical protein
LOC_Os05g49650Os.7011.1.S1_at11/115+28397649..28399629expressed protein
LOC_Os05g49660OsAffx.27385.1.S1_at11/115+28402752..28403108hypothetical protein
LOC_Os05g49670OsAffx.15168.1.S1_at11/115+28404076..28404582hypothetical protein
LOC_Os05g49680Os.47853.1.A1_at11/115+28406464..28410529F-box domain containing protein, expressed
LOC_Os05g49690OsAffx.15169.1.S1_at11/115+28414441..28414873hypothetical protein
LOC_Os05g49690OsAffx.15169.1.S1_x_at11/115+28414441..28414873hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55597.1.S1_at--247--6131Chr05:28389190..28389213 (24 bp)
GAGGGCCTACTTCAGGTGCACTCAC
LOC_Os05g49620
Os.55597.1.S1_at--480--391Chr05:28389416..28389440 (25 bp)
ATCAGCAGGTAGTGGCAGAGCCTAT
LOC_Os05g49620
Os.55597.1.S1_at--1161--1211Chr05:28389530..28389554 (25 bp)
AGTTCAGCAGCGACTTCTCGGCGGG
LOC_Os05g49620
Os.55597.1.S1_at--293--6651Chr05:28389565..28389589 (25 bp)
GTTGACATGGACCACGAGGCTCGTT
LOC_Os05g49620
Os.55597.1.S1_at--677--1871Chr05:28389578..28389602 (25 bp)
ACGAGGCTCGTTTCGAAGATCTTTT
LOC_Os05g49620
Os.55597.1.S1_at--539--2811Chr05:28389593..28389617 (25 bp)
AAGATCTTTTCTCGAGCACTCTTGA
LOC_Os05g49620
Os.55597.1.S1_at--404--5111Chr05:28389608..28389632 (25 bp)
GCACTCTTGAGTTTTTCCAATCGGA
LOC_Os05g49620
Os.55597.1.S1_at--598--5271Chr05:28389655..28389679 (25 bp)
GAATGCACGCAGTAACCGTACTTTG
LOC_Os05g49620
Os.55597.1.S1_at--254--2911Chr05:28389683..28389707 (25 bp)
AAGGTTCGCATCAGTATTAGCTACT
LOC_Os05g49620
Os.55597.1.S1_at--128--331Chr05:28389718..28389742 (25 bp)
ATACTACTCTGTACAGCCTCTATGC
LOC_Os05g49620
Os.55597.1.S1_at--84--4471Chr05:28389733..28389757 (25 bp)
GCCTCTATGCTTTTTCCTTATGAAT
LOC_Os05g49620
Target Sequence 
GAGGGCCTACTTCAGGTGCACTCACCGGCACACGCAGGGATGCAACGCGACCAAGCAGGTGCAGCGCGCCGACGGCGACC
CGCTGCTCTTCGACGTCGTCTACCTTGGCGACCACACCTGCGGCCAGGCCGCCGTCGCCGCCGCCGCCCAGAGCGCGCCG
CCCGAGCATGCCGGCCAGGAGCAGCAGAGGCAGAGCTCGCTGCTCGCTGCGGGAACGGAAGGAATTCATCAGCAGGTAGT
GGCAGAGCCTATGGCGGCGCCGTTCTTGTTCACCTCGACGGCGGCCGGCGGCGTCGACGACGGCTACTTCTCCTTCATCT
CGCCGGCGAACTCCGACTGCCAGTTCAGCAGCGACTTCTCGGCGGGCAGCGTCGGGGTTGACATGGACCACGAGGCTCGT
TTCGAAGATCTTTTCTCGAGCACTCTTGAGTTTTTCCAATCGGAGATTCAGAATCTGTAGGTGGCCGAATGCACGCAGTA
ACCGTACTTTGTTAAAGGTTCGCATCAGTATTAGCTACTGGCCTACTCCATACTACTCTGTACAGCCTCTATGCTTTTTC
CTTATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis