Browse Element(s) Details


OsAffx.27385.1.S1_at

Description tigr:9633.m04662
TID=OsAffx.27385.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4966011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49600NANA5+28373561..28378059retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49610Os.47912.1.S1_at11/115+28380828..28382748membrane associated salt-inducible protein, putative, expressed
LOC_Os05g49620Os.55597.1.S1_at11/115+28388530..28389767WRKY DNA binding domain containing protein, expressed
LOC_Os05g49630Os.57143.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.53361.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.7011.1.S2_x_at3/115+28390296..28393865expressed protein
LOC_Os05g49640Os.7011.1.S2_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.7011.1.S2_x_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.53361.1.S1_at2/115+28394345..28397115hypothetical protein
LOC_Os05g49650Os.7011.1.S1_at11/115+28397649..28399629expressed protein
LOC_Os05g49660OsAffx.27385.1.S1_at11/115+28402752..28403108hypothetical protein
LOC_Os05g49670OsAffx.15168.1.S1_at11/115+28404076..28404582hypothetical protein
LOC_Os05g49680Os.47853.1.A1_at11/115+28406464..28410529F-box domain containing protein, expressed
LOC_Os05g49690OsAffx.15169.1.S1_at11/115+28414441..28414873hypothetical protein
LOC_Os05g49690OsAffx.15169.1.S1_x_at11/115+28414441..28414873hypothetical protein
LOC_Os05g49700NANA5+28416382..28417280AP2 domain containing protein, expressed
LOC_Os05g49710OsAffx.21249.1.S1_at1/115+28420047..28425501retrotransposon protein, putative, unclassified
LOC_Os05g49710Os.17546.2.S1_x_at1/115+28420047..28425501retrotransposon protein, putative, unclassified
LOC_Os05g49720NANA5+28427397..28429278hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27385.1.S1_at--1038--9331Chr05:28402831..28402855 (25 bp)
TCGCCCTAAATCTCGACAGTGCCAT
LOC_Os05g49660
OsAffx.27385.1.S1_at--706--1911Chr05:28402867..28402891 (25 bp)
ACGGAGTCCACGTAGGAAGTGTAGT
LOC_Os05g49660
OsAffx.27385.1.S1_at--846--10071Chr05:28402879..28402903 (25 bp)
TAGGAAGTGTAGTTTGCCTCGGCCT
LOC_Os05g49660
OsAffx.27385.1.S1_at--1099--5311Chr05:28402882..28402906 (25 bp)
GAAGTGTAGTTTGCCTCGGCCTCGA
LOC_Os05g49660
OsAffx.27385.1.S1_at--452--8751Chr05:28402886..28402910 (25 bp)
TGTAGTTTGCCTCGGCCTCGATGAA
LOC_Os05g49660
OsAffx.27385.1.S1_at--327--6852Chr05:28402890..28402914 (25 bp)
GTTTGCCTCGGCCTCGATGAACCAC
LOC_Os05g49660
OsAffx.27385.1.S1_at--93--8871Chr05:28402949..28402973 (25 bp)
TGATGATCGGCTTCATGATGCGGCT
LOC_Os05g49660
OsAffx.27385.1.S1_at--253--9631Chr05:28402961..28402985 (25 bp)
TCATGATGCGGCTGACGACAGGGTA
LOC_Os05g49660
OsAffx.27385.1.S1_at--933--4731Chr05:28402971..28402995 (25 bp)
GCTGACGACAGGGTAGTGGTGGACG
LOC_Os05g49660
OsAffx.27385.1.S1_at--359--8211Chr05:28403039..28403063 (25 bp)
GGAATACCTGGATGAAGTCAACGAA
LOC_Os05g49660
OsAffx.27385.1.S1_at--175--5311Chr05:28403052..28403076 (25 bp)
GAAGTCAACGAAGATGCAGACGGCG
LOC_Os05g49660
Target Sequence 
TCGCCCTAAATCTCGACAGTGCCATCGGCGGTGAGCACGGAGTCCACGTAGGAAGTGTAGTTTGCCTCGGCCTCGATGAA
CCACACCCCTTCGCTGGTGCTGTCGATCTCAGGCTCCCTGATGATCGGCTTCATGATGCGGCTGACGACAGGGTAGTGGT
GGACGACCGATGCGGCCTGGTCCTCGACGGCTTCGGCGGAGACGGAGGGGAATACCTGGATGAAGTCAACGAAGATGCAG
ACGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis