Browse Element(s) Details


Os.47853.1.A1_at

Description gb:AK102063.1
DB_XREF= gi:32987272
TID=Os.47853.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082D19, full insert sequence.
FL= gb:AK102063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4968011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49610Os.47912.1.S1_at11/115+28380828..28382748membrane associated salt-inducible protein, putative, expressed
LOC_Os05g49620Os.55597.1.S1_at11/115+28388530..28389767WRKY DNA binding domain containing protein, expressed
LOC_Os05g49630Os.57143.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.53361.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.7011.1.S2_x_at3/115+28390296..28393865expressed protein
LOC_Os05g49640Os.7011.1.S2_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.7011.1.S2_x_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.53361.1.S1_at2/115+28394345..28397115hypothetical protein
LOC_Os05g49650Os.7011.1.S1_at11/115+28397649..28399629expressed protein
LOC_Os05g49660OsAffx.27385.1.S1_at11/115+28402752..28403108hypothetical protein
LOC_Os05g49670OsAffx.15168.1.S1_at11/115+28404076..28404582hypothetical protein
LOC_Os05g49680Os.47853.1.A1_at11/115+28406464..28410529F-box domain containing protein, expressed
LOC_Os05g49690OsAffx.15169.1.S1_at11/115+28414441..28414873hypothetical protein
LOC_Os05g49690OsAffx.15169.1.S1_x_at11/115+28414441..28414873hypothetical protein
LOC_Os05g49700NANA5+28416382..28417280AP2 domain containing protein, expressed
LOC_Os05g49710OsAffx.21249.1.S1_at1/115+28420047..28425501retrotransposon protein, putative, unclassified
LOC_Os05g49710Os.17546.2.S1_x_at1/115+28420047..28425501retrotransposon protein, putative, unclassified
LOC_Os05g49720NANA5+28427397..28429278hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47853.1.A1_at--1020--6353Chr05:29069892..29069916 (25 bp)
GATGCCAGAGCACCGTCATGACAAA
NONE
Os.47853.1.A1_at--616--51Chr05:28406917..28406941 (25 bp)
ATTGTTGAATCAGCGACAGCACTCG
LOC_Os05g49680
Os.47853.1.A1_at--67--2151Chr05:28406902..28406926 (25 bp)
ACAGCACTCGAATGTCTTACGTTGG
LOC_Os05g49680
Os.47853.1.A1_at--502--10771Chr05:28406881..28406905 (25 bp)
TTGGACACAACGTCAGGTTCGCCTA
LOC_Os05g49680
Os.47853.1.A1_at--957--3471Chr05:28406868..28406892 (25 bp)
CAGGTTCGCCTAGATGTTCTGTGAA
LOC_Os05g49680
Os.47853.1.A1_at--858--1351Chr05:28406815..28406839 (25 bp)
AGAGAGACACTCATGGAAGCCCACA
LOC_Os05g49680
Os.47853.1.A1_at--257--5891Chr05:28406761..28406785 (25 bp)
GAGCTCAAAGTTCCCTCCAAAGTTG
LOC_Os05g49680
Os.47853.1.A1_at--196--6071Chr05:28406737..28406761 (25 bp)
GAGTTAAACGTCTTGGAGCCTTGCA
LOC_Os05g49680
Os.47853.1.A1_at--1058--7271Chr05:28406708..28406732 (25 bp)
GTGCCATGCTCTTGACCTTTAGATG
LOC_Os05g49680
Os.47853.1.A1_at--886--3071Chr05:28406680..28406704 (25 bp)
AATATGTGCGTGTGGTTGTTCTTAA
LOC_Os05g49680
Os.47853.1.A1_at--740--4871Chr05:28406586..28406610 (25 bp)
GCTATCAGCCCTGTTTACTGTTGAG
LOC_Os05g49680
Target Sequence 
GATGCCAGAGCACCGTCATGACAAACTCAAGTGTGTGAAGATAATCAATTTCTCTTCTGTGAAGACTTTGGTTGAGTTAA
CATGTCACATTGTTGAATCAGCGACAGCACTCGAATGTCTTACGTTGGACACAACGTCAGGTTCGCCTAGATGTTCTGTG
AACAGACTTGGTAAATGCTTCTTGATGCGCAGAGAGACACTCATGGAAGCCCACAGAGCACTCAAGGCTGTTCAAACATA
CATCGAGCTCAAAGTTCCCTCCAAAGTTGAGTTAAACGTCTTGGAGCCTTGCAGCCGGTGCCATGCTCTTGACCTTTAGA
TGTCAAATATGTGCGTGTGGTTGTTCTTAATAACCAGTATTGCAACTGTCAGTTACAAGTGTTGTTTTATTAAACGTACA
TTTGCCCCGAAACTATCAGGCTATCAGCCCTGTTTACTGTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47853.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis