Browse Element(s) Details


Os.57143.1.S1_at

Description gb:AK111014.1
DB_XREF= gi:32996223
TID=Os.57143.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G02, full insert sequence.
FL= gb:AK111014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4963011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49590Os.27654.1.S1_at11/115+28361840..28369659phytochrome A supressor spa1, putative, expressed
LOC_Os05g49600NANA5+28373561..28378059retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g49610Os.47912.1.S1_at11/115+28380828..28382748membrane associated salt-inducible protein, putative, expressed
LOC_Os05g49620Os.55597.1.S1_at11/115+28388530..28389767WRKY DNA binding domain containing protein, expressed
LOC_Os05g49630Os.57143.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.53361.1.S1_at11/115+28390296..28393865expressed protein
LOC_Os05g49630Os.7011.1.S2_x_at3/115+28390296..28393865expressed protein
LOC_Os05g49640Os.7011.1.S2_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.7011.1.S2_x_at11/115+28394345..28397115hypothetical protein
LOC_Os05g49640Os.53361.1.S1_at2/115+28394345..28397115hypothetical protein
LOC_Os05g49650Os.7011.1.S1_at11/115+28397649..28399629expressed protein
LOC_Os05g49660OsAffx.27385.1.S1_at11/115+28402752..28403108hypothetical protein
LOC_Os05g49670OsAffx.15168.1.S1_at11/115+28404076..28404582hypothetical protein
LOC_Os05g49680Os.47853.1.A1_at11/115+28406464..28410529F-box domain containing protein, expressed
LOC_Os05g49690OsAffx.15169.1.S1_at11/115+28414441..28414873hypothetical protein
LOC_Os05g49690OsAffx.15169.1.S1_x_at11/115+28414441..28414873hypothetical protein
LOC_Os05g49700NANA5+28416382..28417280AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57143.1.S1_at--550--7111Chr05:28393657..28393681 (25 bp)
GTCAGGTCCCGTTGCGCACGCGCAG
LOC_Os05g49630
Os.57143.1.S1_at--648--1151Chr05:28393505..28393529 (25 bp)
AGATAAATTACCTGCACGGAGGTGG
LOC_Os05g49630
Os.57143.1.S1_at--835--8611Chr05:28393477..28393501 (25 bp)
TGGTGAAAGATCTTGCCCCGTTTGC
LOC_Os05g49630
Os.57143.1.S1_at--474--3151Chr05:28393427..28393451 (25 bp)
AATTCTTCTCCGTGGAGGCAGGTCT
LOC_Os05g49630
Os.57143.1.S1_at--1110--7171Chr05:28393347..28393371 (25 bp)
GTCTGGTGGTGTAAATCTCCAGCCA
LOC_Os05g49630
Os.57143.1.S1_at--166--9851Chr05:28393336..28393360 (25 bp)
TAAATCTCCAGCCAGGAATTCCCGT
LOC_Os05g49630
Os.57143.1.S1_at--1042--931Chr05:28393323..28393347 (25 bp)
AGGAATTCCCGTTGCTATCTCTAGT
LOC_Os05g49630
Os.57143.1.S1_at--846--6671Chr05:28393313..28393337 (25 bp)
GTTGCTATCTCTAGTCTGAACATAT
LOC_Os05g49630
Os.57143.1.S1_at--716--5591Chr05:28393285..28393309 (25 bp)
GAAATAGAACAGACTCCCTCGGTCC
LOC_Os05g49630
Os.57143.1.S1_at--778--6951Chr05:28393264..28393288 (25 bp)
GTCCCATAAACCACGAATCTAGAAT
LOC_Os05g49630
Os.57143.1.S1_at--509--10052Chr10:19675993..19676211 (25 bp)
TAGTACAGTCTGTTTAGATTCGTAG
NONE
Target Sequence 
GTCAGGTCCCGTTGCGCACGCGCAGGGCCGTTGGCTCGCCGTGCCGCCACGTCCCGGTGCCGCCCCACCNNNNCNNNGNN
GNANNCNNCNNNNNNNNNNNAGANGNNGCCATGGCNNCNTCTTCACCACTCGCGGGGATGGAGGCTCCACGGAGATAAAT
TACCTGCACGGAGGTGGTGATGGTGAAAGATCTTGCCCCGTTTGCATTTCACGGTGATGGTGATGGAGAAAATTCTTCTC
CGTGGAGGCAGGTCTGGTGGTGTAACCTCCGACTAGGAATTCCCCGTTGCCATCTCCTCCGTGGAGGCGGGTCTGGTGGT
GTAAATCTCCAGCCAGGAATTCCCGTTGCTATCTCTAGTCTGAACATATTAAGAAATAGAACAGACTCCCTCGGTCCCAT
AAACCACGAATCTAGAATTAGATACGAATCTAGAATTAGATATGACATATTATAGTACAGTCTGTTTAGATTCGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis