Browse Element(s) Details


OsAffx.4765.1.S1_s_at

Description tigr:9634.m00766
TID=OsAffx.4765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g083003/11FAD-dependent oxidoreductase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08250OsAffx.27507.1.S1_at10/116+3992929..3995160hypothetical protein
LOC_Os06g08270OsAffx.15308.1.S1_at11/116+4003935..4004619hypothetical protein
LOC_Os06g08280Os.53574.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08280Os.37872.1.S1_at11/116+4007140..4012540Protein kinase domain containing protein, expressed
LOC_Os06g08290Os.49775.1.S1_at9/116+4015075..4018297terminal acidic SANT 1, putative, expressed
LOC_Os06g08300OsAffx.4765.1.S1_s_at3/116+4018886..4021127FAD-dependent oxidoreductase family protein, putative
LOC_Os06g08310Os.8093.2.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.1.S1_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310Os.8093.2.S1_x_at11/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310OsAffx.5813.1.S1_x_at2/116+4024531..4029376ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08320Os.12267.2.S1_s_at11/116+4032490..403317560S ribosomal protein L39, putative, expressed
LOC_Os06g08320Os.46185.1.S1_x_at1/116+4032490..403317560S ribosomal protein L39, putative, expressed
LOC_Os06g08329NANA6+4035587..4035761NA
LOC_Os06g08340Os.55579.1.S1_at11/116+4039785..4040764AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4765.1.S1_s_at--384--9571Chr06:4021025..4021049 (25 bp)
TCTTCTGTTCCATGGTTTGGCTGGA
LOC_Os06g08300
OsAffx.4765.1.S1_s_at--301--8151Chr06:4021047..4021071 (25 bp)
GGAAAGCTTACTGCCAAGGCTGTAA
LOC_Os06g08300
OsAffx.4765.1.S1_s_at--990--2931Chr06:4021062..4021086 (25 bp)
AAGGCTGTAATTTCCTGCGACGAAA
LOC_Os06g08300
OsAffx.4765.1.S1_s_at--221--9791Chr06:4021180..4021204 (25 bp)
TAAGTGCTATCCTGTTCCTGTTTTG
NONE
OsAffx.4765.1.S1_s_at--1098--471Chr06:4021248..4021272 (25 bp)
ATCTGGGTCAATCCACATGGCATGA
NONE
OsAffx.4765.1.S1_s_at--124--1191Chr06:4021304..4021328 (25 bp)
AGTAGCGATGCCTTCCGTAGGACTT
NONE
OsAffx.4765.1.S1_s_at--615--6931Chr06:4021320..4021344 (25 bp)
GTAGGACTTCCAGTGAGCGTCTCAA
NONE
OsAffx.4765.1.S1_s_at--82--5891Chr06:4021334..4021358 (25 bp)
GAGCGTCTCAAATGCCTGGATATCT
NONE
OsAffx.4765.1.S1_s_at--549--9171Chr06:4021346..4021370 (25 bp)
TGCCTGGATATCTTCAGACGCCATC
NONE
OsAffx.4765.1.S1_s_at--366--3131Chr06:4021375..4021399 (25 bp)
AATTAGCAGCTTATCTCTCATTCCA
NONE
OsAffx.4765.1.S1_s_at--324--3731Chr06:4021417..4021441 (25 bp)
CTACTAATCTTCTCCTGACATCTTA
NONE
Target Sequence 
TCTTCTGTTCCATGGTTTGGCTGGAAAGCTTACTGCCAAGGCTGTAATTTCCTGCGACGAAAACCTAATACCTCCTGAAT
TCACTTGCTGGAAAGAACCTTAGAACTTCAAATGAGCAAAGGAACTTGGAGGATGGTGGTAGTCGAACTGATCCTTAAGT
GCTATCCTGTTCCTGTTTTGGAATGTCAGATAAAGTGCTACAGCATATCGAAATATGAAGCTAATCTGGGTCAATCCACA
TGGCATGAGCTATAACGTAGGAAACAAAGAATTCAGTGGAGTAGCGATGCCTTCCGTAGGACTTCCAGTGAGCGTCTCAA
ATGCCTGGATATCTTCAGACGCCATCTCCCAATTAGCAGCTTATCTCTCATTCCAGGAAACATAGTTCAGGCCTACTAAT
CTTCTCCTGACATCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4765.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis