Browse Element(s) Details


OsAffx.4769.1.S1_at

Description tigr:9634.m00792
TID=OsAffx.4769.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0851011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08480Os.10925.1.S1_at11/116+4166231..4182563Type III restriction enzyme, res subunit family protein, expressed
LOC_Os06g08490Os.6257.1.S1_at11/116+4188087..4189564expressed protein
LOC_Os06g08500OsAffx.27510.2.S1_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08500OsAffx.27510.2.S1_x_at11/116+4191208..4193417Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g08510OsAffx.4769.1.S1_s_at11/116+4199932..4201852expressed protein
LOC_Os06g08510OsAffx.4769.1.S1_at11/116+4199932..4201852expressed protein
LOC_Os06g08510Os.37590.1.S1_at10/116+4199932..4201852expressed protein
LOC_Os06g08520NANA6+4204533..4205996transposon protein, putative, unclassified
LOC_Os06g08530Os.11350.1.S1_x_at11/116+4212191..4217589Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os06g08540OsAffx.15312.1.S1_at11/116+4223415..4226743formin homology 2 domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4769.1.S1_at--1040--6332Chr01:8654458..8654911 (25 bp)
GATGCTGCTTGAGAGGACAGTGCCA
NONE
OsAffx.4769.1.S1_at--44--3852Chr01:8654462..8654915 (25 bp)
CTGCTTGAGAGGACAGTGCCATTGT
NONE
OsAffx.4769.1.S1_at--681--7272Chr01:8654906..8654930 (25 bp)
GTGCCATTGTCTGGGAAATGGGCAA
NONE
OsAffx.4769.1.S1_at--196--8692Chr01:8654913..8654937 (25 bp)
TGTCTGGGAAATGGGCAAATGATTT
NONE
OsAffx.4769.1.S1_at--502--2292Chr01:8654929..8654953 (25 bp)
AAATGATTTGATTGCTACCTCTGAA
NONE
OsAffx.4769.1.S1_at--718--8832Chr01:8654932..8654956 (25 bp)
TGATTTGATTGCTACCTCTGAAGAG
NONE
OsAffx.4769.1.S1_at--527--212Chr01:8654934..8654958 (25 bp)
ATTTGATTGCTACCTCTGAAGAGTT
NONE
OsAffx.4769.1.S1_at--459--6592Chr01:8654938..8654962 (25 bp)
GATTGCTACCTCTGAAGAGTTCTCC
NONE
OsAffx.4769.1.S1_at--267--9092Chr01:8654941..8654965 (25 bp)
TGCTACCTCTGAAGAGTTCTCCTTG
NONE
OsAffx.4769.1.S1_at--174--9972Chr01:8654944..8654968 (25 bp)
TACCTCTGAAGAGTTCTCCTTGCTC
NONE
OsAffx.4769.1.S1_at--942--9471Chr06:4200133..4200157 (25 bp)
TCTGAAGAGTTCTCCTTGCTCTTGT
LOC_Os06g08510
Target Sequence 
GATGCTGCTTGAGAGGACAGTGCCATTGTCTGGGAAATGGGCAAATGATTTGATTGCTACCTCTGAAGAGTTCTCCTTGC
TCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis