Browse Element(s) Details


OsAffx.4774.1.S1_at

Description tigr:9634.m00838
TID=OsAffx.4774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0889011/11Ligand-gated ion channel family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08870OsAffx.27518.3.S1_x_at11/116+4448305..4448774hypothetical protein
LOC_Os06g08880Os.52182.1.S1_at10/116+4458008..4462883Receptor family ligand binding region containing protein, expressed
LOC_Os06g08890OsAffx.4774.1.S1_at11/116+4471701..4474022Ligand-gated ion channel family protein, expressed
LOC_Os06g08900OsAffx.27521.1.S1_at11/116+4480241..4486784Ligand-gated ion channel family protein
LOC_Os06g08910Os.27742.2.S1_a_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910Os.27742.1.S1_at11/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08910OsAffx.4776.1.S1_s_at2/116+4488589..4492910Ligand-gated ion channel family protein, expressed
LOC_Os06g08920OsAffx.27520.1.S1_at11/116+4496906..4498414hypothetical protein
LOC_Os06g08920OsAffx.21973.1.S1_at1/116+4496906..4498414hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4774.1.S1_at--778--2591Chr06:4472303..4472327 (25 bp)
AACGAGTTCTGGGTGTTTCCTCAGA
LOC_Os06g08890
OsAffx.4774.1.S1_at--304--8572Chr09:10901788..10901815 (24 bp)
TGGATTTGCTTTTGGATTCCCTATA
NONE
OsAffx.4774.1.S1_at--737--91Chr06:4472136..4472160 (25 bp)
ATTCCCTATAGGTTCTCCATTGGTC
LOC_Os06g08890
OsAffx.4774.1.S1_at--667--9751Chr06:4472109..4472133 (25 bp)
TAATCTTTCAGTAGCCATCTTGGAC
LOC_Os06g08890
OsAffx.4774.1.S1_at--928--3351Chr06:4472025..4472049 (25 bp)
CACGCCTCTCACTTTGGAAAATTTC
LOC_Os06g08890
OsAffx.4774.1.S1_at--629--2431Chr06:4472008..4472032 (25 bp)
AAAATTTCTCCGGTCTGTTCGTCAT
LOC_Os06g08890
OsAffx.4774.1.S1_at--1099--8771Chr06:4471974..4471998 (25 bp)
TGTTTCAACTCTCATGCTGCTGATA
LOC_Os06g08890
OsAffx.4774.1.S1_at--214--5371Chr06:4471838..4471862 (25 bp)
GAAGAACCCCTCCTTGAAGCCAGAG
LOC_Os06g08890
OsAffx.4774.1.S1_at--130--1891Chr06:4471810..4471834 (25 bp)
ACGATTCCCGGAGTGCTGACCAGAA
LOC_Os06g08890
OsAffx.4774.1.S1_at--275--6811Chr06:4471780..4471804 (25 bp)
GTTTTGCTGCTGACCAAGAGCCTAG
LOC_Os06g08890
OsAffx.4774.1.S1_at--97--6131Chr06:4471746..4471770 (25 bp)
GAGTGGCACATCCAATGGCCATGTT
LOC_Os06g08890
Target Sequence 
AACGAGTTCTGGGTGTTTCCTCAGACATACAATATCCTTGGATTTGCTTTTGGATTCCCTATAGGTTCTCCATTGGTCCA
TAATCTTTCAGTAGCCATCTTGGACATGACAAGAATTACCAACAAGACTGATTCACAGTTGACAGATGATCATGGCAGCC
ATTCCACGCCTCTCACTTTGGAAAATTTCTCCGGTCTGTTCGTCATCGTTGGATCTGTTTCAACTCTCATGCTGCTGATA
AGCATTGTGAGGTTGGTTGTTTCGAGATGCTCAGAGACGGCAAACACTAATGCTCCAAGCATTGATGACGACAATGGGGA
TGAAGAATCGAATCCACAGCAGAATGACACCGAAGAACCCCTCCTTGAAGCCAGAGACAACGATTCCCGGAGTGCTGACC
AGAATGGCAGTTTTGCTGCTGACCAAGAGCCTAGTCAAATGCAGAGTGGCACATCCAATGGCCATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis