Browse Element(s) Details


OsAffx.4791.1.S1_at

Description tigr:9634.m01042
TID=OsAffx.4791.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1068010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10650Os.27916.1.S1_at11/116+5554008..5558137tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os06g10660Os.5724.1.S1_at11/116+5558910..5562098LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os06g10670NANA6+5568911..5570472Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g10680OsAffx.4791.1.S1_at10/116+5571600..5572851hypothetical protein
LOC_Os06g10690Os.9899.1.S1_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10690Os.9899.1.S2_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10700NANA6+5585612..5585902hypothetical protein
LOC_Os06g10710OsAffx.4792.1.S1_at11/116+5587422..5588312hypothetical protein
LOC_Os06g10720NANA6+5596521..5596826hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4791.1.S1_at--768--2311Chr06:5571631..5571655 (25 bp)
AAAGGAGGCCACGTGGTTGTCACCA
LOC_Os06g10680
OsAffx.4791.1.S1_at--948--6211Chr06:5571635..5571659 (25 bp)
GAGGCCACGTGGTTGTCACCAGAAA
LOC_Os06g10680
OsAffx.4791.1.S1_at--473--8571Chr06:5571644..5571668 (25 bp)
TGGTTGTCACCAGAAACACCCTCGA
LOC_Os06g10680
OsAffx.4791.1.S1_at--388--9371Chr06:5571665..5571689 (25 bp)
TCGACGCTCACCACCAGAGAAGGAA
LOC_Os06g10680
OsAffx.4791.1.S1_at--1075--8951Chr06:5571991..5572015 (25 bp)
TGAAAAATTAGATGGCCCCTTTTCT
LOC_Os06g10680
OsAffx.4791.1.S1_at--122--6231Chr06:5572001..5572025 (25 bp)
GATGGCCCCTTTTCTAATATTGTAG
LOC_Os06g10680
OsAffx.4791.1.S1_at--758--3471Chr06:5572038..5572062 (25 bp)
CATGGAGAAAAACAAAGCCCGTTGG
LOC_Os06g10680
OsAffx.4791.1.S1_at--976--4511Chr06:5572054..5572078 (25 bp)
GCCCGTTGGGCCATGGGAAGACATA
LOC_Os06g10680
OsAffx.4791.1.S1_at--16--2271NONE
AAATCTTTCAAGAGGTGTCAGAGGT
NONE
OsAffx.4791.1.S1_at--258--6631Chr06:5572781..5572805 (25 bp)
GTTGGTGGGTGAATATGCTGTTCAT
LOC_Os06g10680
OsAffx.4791.1.S1_at--127--631Chr06:5572795..5572819 (25 bp)
ATGCTGTTCATTTCACTATCTTTGT
LOC_Os06g10680
Target Sequence 
AAAGGAGGCCACGTGGTTGTCACCAGAAACACCCTCGACGCTCACCACCAGAGAAGGAAAATATGGTGACTGAAAAATTA
GATGGCCCCTTTTCTAATATTGTAGGAATGAAAAACACATGGAGAAAAACAAAGCCCGTTGGGCCATGGGAAGACATAAA
GAAAAGGAATGGAAATCTTTCAAGAGGTGTCAGAGGTTGGTGGGTGAATATGCTGTTCATTTCACTATCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis