Browse Element(s) Details


OsAffx.4805.1.S1_at

Description tigr:9634.m01167
TID=OsAffx.4805.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=syntaxin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1193011/11SNARE domain containing protein
LOC_Os01g033201/11Bowman-Birk type bran trypsin inhibitor precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11900OsAffx.15378.1.S1_at11/116+6332935..6333979hypothetical protein
LOC_Os06g11910Os.54099.1.S1_at11/116+6343014..6346602expressed protein
LOC_Os06g11920Os.5679.1.S1_at11/116+6348121..6351937Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os06g11930OsAffx.4805.1.S1_at11/116+6354146..6354982SNARE domain containing protein
LOC_Os06g11940OsAffx.27574.1.S1_at11/116+6357047..6357856AP2 domain containing protein, expressed
LOC_Os06g11950NANA6+6360090..6361250Zinc knuckle family protein
LOC_Os06g11960Os.16735.1.S1_at1/116+6368183..63696952,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative
LOC_Os06g11970Os.49822.1.S1_at11/116+6371354..6375375SRF-type transcription factor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000903biological_processcellular morphogenesis during vegetative growth
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006896biological_processGolgi to vacuole transport
GO:0006944biological_processmembrane fusion
GO:0007033biological_processvacuole organization and biogenesis
GO:0009660biological_processamyloplast organization and biogenesis
GO:0009959biological_processnegative gravitropism
GO:0010118biological_processstomatal movement
GO:0005770cellular_componentlate endosome
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016021cellular_componentintegral to membrane
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4805.1.S1_at--863--6051Chr06:6354461..6354485 (25 bp)
GAGTACCAGAAGATCGAGCGACGCA
LOC_Os06g11930
OsAffx.4805.1.S1_at--208--2551Chr06:6354544..6354568 (25 bp)
AACTCCGGGCTTCAATCACATAAAC
LOC_Os06g11930
OsAffx.4805.1.S1_at--166--91Chr06:6354586..6354610 (25 bp)
ATTCCCCGAACAGAAGCAGACGCAG
LOC_Os06g11930
OsAffx.4805.1.S1_at--593--1591Chr06:6354609..6354633 (25 bp)
AGCTCGCCGTGCTACGAGACATCAA
LOC_Os06g11930
OsAffx.4805.1.S1_at--1155--5631Chr06:6354641..6354665 (25 bp)
GACAGCGAGATCGAGCTCCACGAAG
LOC_Os06g11930
OsAffx.4805.1.S1_at--51--9231Chr06:6354657..6354681 (25 bp)
TCCACGAAGCCATCATCGCGGAGAG
LOC_Os06g11930
OsAffx.4805.1.S1_at--1--6051Chr06:6354728..6354752 (25 bp)
GAGATCTTCAGGGACCTCGCGGTGC
LOC_Os06g11930
OsAffx.4805.1.S1_at--106--1731Chr06:6354762..6354786 (25 bp)
ACCAGGGTGAGTGCATCGAGATCGT
LOC_Os06g11930
OsAffx.4805.1.S1_at--782--6392Chr06:6354781..6354805 (25 bp)
GATCGTCACCGCCAACATCGAGATG
LOC_Os06g11930
OsAffx.4805.1.S1_at--95--4431Chr06:6354822..6354846 (25 bp)
GCCAGGCGGAGGTGCAGATCTCCAA
LOC_Os06g11930
OsAffx.4805.1.S1_at--852--9331Chr06:6354908..6354932 (25 bp)
TCGCCGTCGAAATGCTTGCTGCTGG
LOC_Os06g11930
Target Sequence 
GAGTACCAGAAGATCGAGCGACGCATTGCGGCGGTCGAGCGGCAAGAAACCGCCGCCGCCGCTCGCCGCTCGCCGCCGCC
ACCAACTCCGGGCTTCAATCACATAAACAACAATGGCGATCACACATTCCCCGAACAGAAGCAGACGCAGCTCGCCGTGC
TACGAGACATCAACCTGCTCGACAGCGAGATCGAGCTCCACGAAGCCATCATCGCGGAGAGGGAGCAGGGGATACTGGAG
GTGCAGCAGGAGATCGCCGACATCCACGAGATCTTCAGGGACCTCGCGGTGCTCGTCCACGACCAGGGTGAGTGCATCGA
GATCGTCACCGCCAACATCGAGATGACCGAGGCGGCGACGAGCCAGGCGGAGGTGCAGATCTCCAAAGCCGCGGGGATTC
GAGGGGAGAAGGAGGAGCTCCTGACCGGCGCAGGAACCGAGGACAACTCGCCGTCGAAATGCTTGCTGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis