Browse Element(s) Details


OsAffx.4827.1.S1_at

Description tigr:9634.m01332
TID=OsAffx.4827.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to serine carboxypeptidase ii-3 precursor (ec 3.4.16.6) (cp-mii.3). (barley
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1341011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13370OsAffx.25936.2.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13370OsAffx.25936.5.S1_x_at1/116+7362153..7365160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g13380NANA6+7366792..7367196hypothetical protein
LOC_Os06g13390OsAffx.15407.1.S1_at11/116+7368205..7369766SAM dependent carboxyl methyltransferase family protein
LOC_Os06g13399NANA6+7372075..7372597NA
LOC_Os06g13410OsAffx.4827.1.S1_at11/116+7375287..7375933hypothetical protein
LOC_Os06g13420OsAffx.27611.1.S1_at11/116+7377699..7379891hypothetical protein
LOC_Os06g13430NANA6+7387963..7392345retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g13440OsAffx.4828.1.S1_at11/116+7396013..7396463hypothetical protein
LOC_Os06g13450OsAffx.15408.1.S1_at10/116+7400128..7403268Cys/Met metabolism PLP-dependent enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4827.1.S1_at--260--4771Chr06:7375878..7375902 (25 bp)
GCTGCATCGCACTGTTCTTGCTGGT
LOC_Os06g13410
OsAffx.4827.1.S1_at--587--3471Chr06:7375789..7375813 (25 bp)
CAGGGAGACTACCTGGACAGACTGC
LOC_Os06g13410
OsAffx.4827.1.S1_at--179--8531Chr06:7375776..7375800 (25 bp)
TGGACAGACTGCGTGGCTCGCCATC
LOC_Os06g13410
OsAffx.4827.1.S1_at--870--4491Chr06:7375735..7375759 (25 bp)
GCCGTCGTGTCAGCCGAGGATCGTA
LOC_Os06g13410
OsAffx.4827.1.S1_at--862--1671Chr06:7375724..7375748 (25 bp)
AGCCGAGGATCGTAGCGCGCCATCA
LOC_Os06g13410
OsAffx.4827.1.S1_at--1132--371Chr06:7375703..7375727 (25 bp)
ATCACTCTCCGATAGGTGGCATGCG
LOC_Os06g13410
OsAffx.4827.1.S1_at--475--3611Chr06:7375460..7375484 (25 bp)
CTTGGCTGCTCGTCACTCGGGTACG
LOC_Os06g13410
OsAffx.4827.1.S1_at--182--7991Chr06:7375375..7375399 (25 bp)
GGATGAGATGGCCACCAGTGTCGTC
LOC_Os06g13410
OsAffx.4827.1.S1_at--536--1111Chr06:7375359..7375383 (25 bp)
AGTGTCGTCGCACCACGTCGCGCTG
LOC_Os06g13410
OsAffx.4827.1.S1_at--580--71Chr06:7375324..7375348 (25 bp)
ATTGCTCCTCTGAGGTTACCATGCC
LOC_Os06g13410
OsAffx.4827.1.S1_at--421--3771Chr06:7375317..7375341 (25 bp)
CTCTGAGGTTACCATGCCATTCCCG
LOC_Os06g13410
Target Sequence 
GCTGCATCGCACTGTTCTTGCTGGTGGCAGCAGCGCAATGCCTCGTGCTGCTCGCTGGCGCAGCCGGAGCGGCGGAGCCA
CGCACGCGCCAGGGAGACTACCTGGACAGACTGCGTGGCTCGCCATCGTCGAGGGTGTCGCTGGCCGTCGTGTCAGCCGA
GGATCGTAGCGCGCCATCACTCTCCGATAGGTGGCATGCGGCGCCAACGACAGCGCCGGCGGCGCTTGGGAGCCAGGAGG
CGGACCGCATGGTGACGGGGCGCGCGCTGTTCTACTACCTCGCCAAGGCCAACGGCGGCTCCGCCACGTCGTCCAAGGGG
CCCCTCCTCCTCTGGCTCAACGGTGGCCTTGGCTGCTCGTCACTCGGGTACGGCACCATCGAGGAGCTCGGCCTGTTCCG
CGTCAAGAGCGACGGCGAGATGCTCAGCGCGAGGATGAGATGGCCACCAGTGTCGTCGCACCACGTCGCGCTGACCTCGC
CCCATTGCTCCTCTGAGGTTACCATGCCATTCCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis