Browse Element(s) Details


OsAffx.4954.1.S1_at

Description tigr:9634.m02742
TID=OsAffx.4954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to polygalacturonase PG2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2867011/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28630OsAffx.4953.1.S1_at11/116+16301036..16304077expressed protein
LOC_Os06g28630Os.12606.1.S1_at10/116+16301036..16304077expressed protein
LOC_Os06g28639NANA6+16307991..16308169NA
LOC_Os06g28648NANA6+16316198..16316691NA
LOC_Os06g28660NANA6+16320280..16326031retrotransposon protein, putative, unclassified
LOC_Os06g28670OsAffx.4954.1.S1_x_at11/116+16328397..16330326Polygalacturonase family protein, expressed
LOC_Os06g28670OsAffx.4954.1.S1_at11/116+16328397..16330326Polygalacturonase family protein, expressed
LOC_Os06g28680OsAffx.4955.1.S1_at11/116+16334040..16334907hypothetical protein
LOC_Os06g28690OsAffx.27854.2.S1_at10/116+16338517..16339770hypothetical protein
LOC_Os06g28700NANA6+16341336..16341614hypothetical protein
LOC_Os06g28710OsAffx.26327.1.S1_at11/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710Os.15412.1.S1_x_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710OsAffx.26327.1.S1_s_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28720OsAffx.4956.1.S1_at11/116+16351390..16352259expressed protein
LOC_Os06g28730Os.40388.2.S1_s_at11/116+16352729..16353523hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4954.1.S1_at--760--5711Chr06:16329778..16329802 (25 bp)
GACTGCGTCTCCATCCAGGACGGCT
LOC_Os06g28670
OsAffx.4954.1.S1_at--945--571Chr06:16329790..16329814 (25 bp)
ATCCAGGACGGCTGCTCGCGCGTGC
LOC_Os06g28670
OsAffx.4954.1.S1_at--321--4251Chr06:16329887..16329911 (25 bp)
CCGTCGTGTCGGACGTGACCGTGCA
LOC_Os06g28670
OsAffx.4954.1.S1_at--699--8991Chr06:16330019..16330043 (25 bp)
TGAAGACGCCGATCGTGATCGACCA
LOC_Os06g28670
OsAffx.4954.1.S1_at--486--5811Chr06:16330023..16330047 (25 bp)
GACGCCGATCGTGATCGACCAGTAC
LOC_Os06g28670
OsAffx.4954.1.S1_at--36--3451Chr06:16330042..16330066 (25 bp)
CAGTACTACTGCGACCACGCGACGT
LOC_Os06g28670
OsAffx.4954.1.S1_at--752--9271Chr06:16330096..16330120 (25 bp)
TCCGGCGTGGCGTACAGCGGCATCA
LOC_Os06g28670
OsAffx.4954.1.S1_at--928--5751Chr06:16330125..16330149 (25 bp)
GACGTACACGCAGCGGCCCGTGTAT
LOC_Os06g28670
OsAffx.4954.1.S1_at--1080--4531Chr06:16330140..16330164 (25 bp)
GCCCGTGTATCTGGCGTGCAGCGAC
LOC_Os06g28670
OsAffx.4954.1.S1_at--1119--4771Chr06:16330182..16330206 (25 bp)
GCTGCGCCTCGAGGACATCAAGCTC
LOC_Os06g28670
OsAffx.4954.1.S1_at--1072--2071Chr06:16330196..16330220 (25 bp)
ACATCAAGCTCGCGCCGGTGAAGGA
LOC_Os06g28670
Target Sequence 
GACTGCGTCTCCATCCAGGACGGCTGCTCGCGCGTGCTCGTCCGCGGCGTCACCTGCGGCCCGGGCCACGGCATCAGCAT
CGGCGGGCTCGGCAAGGGCGGCGCCATGGCCGTCGTGTCGGACGTGACCGTGCAGGACGTGTCCCTGGTGGGGACGTCGG
CGGGGGTGAGGATCAAGACGTGGCAGGGCGGGTCCGGGTCGGTGAGGGGCGTGCTGTTCTCCGGCGTGCGCGTGTCGGCG
GTGAAGACGCCGATCGTGATCGACCAGTACTACTGCGACCACGCGACGTGCGCCAACCAGACGGCGGCGGTGGCCGTGTC
CGGCGTGGCGTACAGCGGCATCACGGGGACGTACACGCAGCGGCCCGTGTATCTGGCGTGCAGCGACGCGGCGCCGTGCG
CCGGGCTGCGCCTCGAGGACATCAAGCTCGCGCCGGTGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis