Browse Element(s) Details


OsAffx.4955.1.S1_at

Description tigr:9634.m02743
TID=OsAffx.4955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2868011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28648NANA6+16316198..16316691NA
LOC_Os06g28660NANA6+16320280..16326031retrotransposon protein, putative, unclassified
LOC_Os06g28670OsAffx.4954.1.S1_x_at11/116+16328397..16330326Polygalacturonase family protein, expressed
LOC_Os06g28670OsAffx.4954.1.S1_at11/116+16328397..16330326Polygalacturonase family protein, expressed
LOC_Os06g28680OsAffx.4955.1.S1_at11/116+16334040..16334907hypothetical protein
LOC_Os06g28690OsAffx.27854.2.S1_at10/116+16338517..16339770hypothetical protein
LOC_Os06g28700NANA6+16341336..16341614hypothetical protein
LOC_Os06g28710OsAffx.26327.1.S1_at11/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710Os.15412.1.S1_x_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28710OsAffx.26327.1.S1_s_at9/116+16344531..16347893transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g28720OsAffx.4956.1.S1_at11/116+16351390..16352259expressed protein
LOC_Os06g28730Os.40388.2.S1_s_at11/116+16352729..16353523hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4955.1.S1_at--735--10851Chr06:16334103..16334127 (25 bp)
TTGGCGTTCGGCTTGGACGCACGAC
LOC_Os06g28680
OsAffx.4955.1.S1_at--921--4031Chr06:16334107..16334131 (25 bp)
CGTTCGGCTTGGACGCACGACTGTG
LOC_Os06g28680
OsAffx.4955.1.S1_at--518--1631Chr06:16334142..16334166 (25 bp)
AGCGAGCACGCGAGGGTGGTGAACC
LOC_Os06g28680
OsAffx.4955.1.S1_at--1010--7591Chr06:16334624..16334648 (25 bp)
GGGCACGTTCAACCGGCTGGCTGGG
LOC_Os06g28680
OsAffx.4955.1.S1_at--797--2831Chr06:16334654..16334678 (25 bp)
AAGGATGGGAAACAGACTTCAAGGG
LOC_Os06g28680
OsAffx.4955.1.S1_at--22--3931Chr06:16334714..16334738 (25 bp)
CTGGCCCAGGGAGGAAAATGACAGA
LOC_Os06g28680
OsAffx.4955.1.S1_at--809--7732Chr11:23245408..23245432 (25 bp)
GGTGGTCCAAAGGAATAGGGATCTT
NONE
OsAffx.4955.1.S1_at--593--271Chr06:16334783..16334807 (25 bp)
ATAGGGATCTTTCTCAATTTTTCTG
LOC_Os06g28680
OsAffx.4955.1.S1_at--172--8212Chr11:23245448..23245472 (25 bp)
GGAATTTCAGAGATGGACTTTTGGA
NONE
OsAffx.4955.1.S1_at--245--9652Chr11:23245454..23245478 (25 bp)
TCAGAGATGGACTTTTGGAGAGTAT
NONE
OsAffx.4955.1.S1_at--875--5692Chr11:23245463..23245487 (25 bp)
GACTTTTGGAGAGTATTTGATGGAA
NONE
Target Sequence 
TTGGCGTTCGGCTTGGACGCACGACTGTGGGCGGTGGAGAGCGAGCACGCGAGGGTGGTGAACCCGGAGCAGCGGTGGCG
GGCACGTTCAACCGGCTGGCTGGGGAAGAAAGGATGGGAAACAGACTTCAAGGGGAGAGGGGGTGGGCCGGACCGAGTGA
GGGAAGGGGCTGGCCCAGGGAGGAAAATGACAGAGGAGAGGGAGTTGGGCTATGGGAAAGGAAAGGTGGTCCAAAGGAAT
AGGGATCTTTCTCAATTTTTCTGGGGAATTTCAGAGATGGACTTTTGGAGAGTATTTGATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis